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综合生物信息学方法为前列腺癌的预后和进展预测提供了一种新的基因表达风险模型。

Integrative bioinformatics approach yields a novel gene expression risk model for prognosis and progression prediction in prostate cancer.

机构信息

Department of Urology, Zhongshan Hospital, Fudan University, Shanghai, China.

School of Basic Medical Sciences, Fudan University, Shanghai, China.

出版信息

J Cell Mol Med. 2024 Jun;28(11):e18405. doi: 10.1111/jcmm.18405.

Abstract

Prostate cancer (PCa), a prevalent malignancy among elderly males, exhibits a notable rate of advancement, even when subjected to conventional androgen deprivation therapy or chemotherapy. An effective progression prediction model would prove invaluable in identifying patients with a higher progression risk. Using bioinformatics strategies, we integrated diverse data sets of PCa to construct a novel risk model predicated on gene expression and progression-free survival (PFS). The accuracy of the model was assessed through validation using an independent data set. Eight genes were discerned as independent prognostic factors and included in the prediction model. Patients assigned to the high-risk cohort demonstrated a diminished PFS, and the areas under the curve of our model in the validation set for 1-year, 3-year, and 5-year PFS were 0.9325, 0.9041 and 0.9070, respectively. Additionally, through the application of single-cell RNA sequencing to two castration-related prostate cancer (CRPC) samples and two hormone-related prostate cancer (HSPC) samples, we discovered that luminal cells within CRPC exhibited an elevated risk score. Subsequent molecular biology experiments corroborated our findings, illustrating heightened SYK expression levels within tumour tissues and its contribution to cancer cell migration. We found that the knockdown of SYK could inhibit migration in PCa cells. Our progression-related risk model demonstrated the potential prognostic value of SYK and indicated its potential as a target for future diagnosis and treatment strategies in PCa management.

摘要

前列腺癌(PCa)是老年男性中常见的恶性肿瘤,即使接受传统的雄激素剥夺疗法或化疗,其进展率也很高。一个有效的进展预测模型对于识别具有更高进展风险的患者将非常有价值。我们使用生物信息学策略整合了 PCa 的多个数据集,构建了一个基于基因表达和无进展生存期(PFS)的新风险模型。通过使用独立数据集进行验证来评估模型的准确性。确定了 8 个作为独立预后因素的基因,并将其纳入预测模型。被分配到高风险组的患者 PFS 降低,我们的模型在验证集中预测 1 年、3 年和 5 年 PFS 的曲线下面积分别为 0.9325、0.9041 和 0.9070。此外,通过对两个去势相关前列腺癌(CRPC)样本和两个激素相关前列腺癌(HSPC)样本进行单细胞 RNA 测序,我们发现 CRPC 中的腔细胞表现出更高的风险评分。随后的分子生物学实验证实了我们的发现,表明肿瘤组织中 SYK 的表达水平升高,并促进了癌细胞迁移。我们发现 SYK 的敲低可以抑制 PCa 细胞的迁移。我们的进展相关风险模型显示了 SYK 的潜在预后价值,并表明其可能成为未来 PCa 管理中诊断和治疗策略的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0321/11154836/5eb09d99afda/JCMM-28-e18405-g004.jpg

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