新型 FFPE 蛋白质组学方法表明,催乳素诱导蛋白是激素诱导细胞骨架重塑的空间生物标志物。

Novel FFPE proteomics method suggests prolactin induced protein as hormone induced cytoskeleton remodeling spatial biomarker.

机构信息

International Centre for Cancer Vaccine Science, University of Gdansk, Kladki 24, 80-822, Gdansk, Poland.

Medical University of Gdansk, University of Gdansk, Mariana Smoluchowskiego 17, 80-214, Gdansk, Poland.

出版信息

Commun Biol. 2024 Jun 8;7(1):708. doi: 10.1038/s42003-024-06354-8.

Abstract

Robotically assisted proteomics provides insights into the regulation of multiple proteins achieving excellent spatial resolution. However, developing an effective method for spatially resolved quantitative proteomics of formalin fixed paraffin embedded tissue (FFPE) in an accessible and economical manner remains challenging. We introduce non-robotic In-insert FFPE proteomics approach, combining glass insert FFPE tissue processing with spatial quantitative data-independent mass spectrometry (DIA). In-insert approach identifies 450 proteins from a 5 µm thick breast FFPE tissue voxel with 50 µm lateral dimensions covering several tens of cells. Furthermore, In-insert approach associated a keratin series and moesin (MOES) with prolactin-induced protein (PIP) indicating their prolactin and/or estrogen regulation. Our data suggest that PIP is a spatial biomarker for hormonally triggered cytoskeletal remodeling, potentially useful for screening hormonally affected hotspots in breast tissue. In-insert proteomics represents an alternative FFPE processing method, requiring minimal laboratory equipment and skills to generate spatial proteotype repositories from FFPE tissue.

摘要

机器人辅助蛋白质组学提供了对多种蛋白质调控的深入了解,实现了优异的空间分辨率。然而,以一种易于获取且经济的方式,发展用于福尔马林固定石蜡包埋组织(FFPE)的空间分辨定量蛋白质组学的有效方法仍然具有挑战性。我们介绍了一种非机器人的 In-insert FFPE 蛋白质组学方法,该方法将玻璃插入 FFPE 组织处理与空间定量数据非依赖性质谱(DIA)相结合。In-insert 方法从 5 µm 厚的乳腺 FFPE 组织体素中鉴定出 450 种蛋白质,其横向尺寸为 50 µm,覆盖数十个细胞。此外,In-insert 方法将角蛋白系列和 moesin(MOES)与催乳素诱导蛋白(PIP)相关联,表明它们受催乳素和/或雌激素的调节。我们的数据表明,PIP 是激素触发细胞骨架重塑的空间生物标志物,可能有助于筛选乳腺组织中受激素影响的热点。In-insert 蛋白质组学代表了一种替代的 FFPE 处理方法,仅需最少的实验室设备和技能,即可从 FFPE 组织中生成空间蛋白质组学存储库。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5e3f/11162451/0e5335293601/42003_2024_6354_Fig1_HTML.jpg

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