应用 iTRAQ 和 PRM 基于比较蛋白质组学分析鉴定顺铂诱导急性肾损伤相关蛋白。

Identification of proteins related to SIS3 by iTRAQ and PRM-based comparative proteomic analysis in cisplatin-induced acute kidney injury.

机构信息

Department of Nephrology, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, Guangdong, China.

Department of Nephrology, The First Affiliated Hospital, Jiangxi Medical College, Nanchang University, Nanchang, Jiangxi, China.

出版信息

PeerJ. 2024 Jun 4;12:e17485. doi: 10.7717/peerj.17485. eCollection 2024.

Abstract

BACKGROUND

Cisplatin is a commonly used nephrotoxic drug and can cause acute kidney injury (AKI). In the present study, isobaric tags for relative and absolute quantification (iTRAQ) and parallel reaction monitoring (PRM)-based comparative proteomics were used to analyze differentially expressed proteins (DEPs) to determine the key molecular mechanism in mice with cisplatin-induced AKI in the presence or absence of SIS3, a specific p-smad3 inhibitor, intervention.

METHODS

The cisplatin-induced AKI mouse model was established and treated with SIS3. We used iTRAQ to search for DEPs, PRM to verify key DEPs and combined Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) for bioinformatics analysis. We then assessed lipid deposition, malondialdehyde (MDA) and reactive oxygen species (ROS) and detected the expression of SREBF1, SCD1, CPT1A, PPARα and NDRG1 in vitro.

RESULTS

Proteomic analysis showed that the identified DEPs were mainly enriched in energy metabolism pathways, especially in lipid metabolism. When SIS3 was applied to inhibit the phosphorylation of Smad3, the expression of NDRG1 and fatty acid oxidation key proteins CPT1A and PPARα increased, the expression of lipid synthesis related proteins SREBF1 and SCD1 decreased and the production of lipid droplets, MDA and ROS decreased.

CONCLUSION

SIS3 alleviates oxidative stress, reduces lipid accumulation and promotes fatty acid oxidation through NDRG1 in cisplatin-induced AKI. Our study provides a new candidate protein for elucidating the molecular mechanisms of fatty acid metabolism disorders in cisplatin-induced acute kidney injury.

摘要

背景

顺铂是一种常用的肾毒性药物,可导致急性肾损伤(AKI)。在本研究中,采用等重同位素标记相对和绝对定量(iTRAQ)和平行反应监测(PRM)的比较蛋白质组学方法分析差异表达蛋白(DEPs),以确定在存在或不存在 SIS3(一种特异性 p-smad3 抑制剂)的情况下,顺铂诱导 AKI 小鼠的关键分子机制。

方法

建立顺铂诱导的 AKI 小鼠模型并进行 SIS3 处理。我们使用 iTRAQ 寻找 DEPs,PRM 验证关键 DEPs,并结合基因本体论(GO)和京都基因与基因组百科全书(KEGG)进行生物信息学分析。然后,我们评估了体外的脂质沉积、丙二醛(MDA)和活性氧(ROS),并检测了 SREBF1、SCD1、CPT1A、PPARα 和 NDRG1 的表达。

结果

蛋白质组学分析表明,鉴定出的 DEPs 主要富集在能量代谢途径中,特别是在脂质代谢中。当应用 SIS3 抑制 Smad3 的磷酸化时,NDRG1 和脂肪酸氧化关键蛋白 CPT1A 和 PPARα 的表达增加,脂质合成相关蛋白 SREBF1 和 SCD1 的表达减少,脂质滴、MDA 和 ROS 的产生减少。

结论

SIS3 通过 NDRG1 减轻顺铂诱导的 AKI 中的氧化应激,减少脂质积累并促进脂肪酸氧化。我们的研究为阐明顺铂诱导急性肾损伤中脂肪酸代谢紊乱的分子机制提供了一个新的候选蛋白。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b2f/11160430/60dc2826b4f0/peerj-12-17485-g001.jpg

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