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综合生物信息学和验证揭示 PTGS2 及其相关分子可减轻 TNF-α 诱导的内皮细胞衰老。

Integrated bioinformatics and validation reveal PTGS2 and its related molecules to alleviate TNF-α-induced endothelial senescence.

机构信息

Department of Cardiovascular Surgery, Changhai Hospital, The Naval Medical University, 168 Changhai Road, Shanghai, 200433, China.

出版信息

In Vitro Cell Dev Biol Anim. 2024 Sep;60(8):888-902. doi: 10.1007/s11626-024-00931-1. Epub 2024 Jun 10.

Abstract

Accumulative evidences have indicated the interaction between cellular senescence and ferroptosis. This study intends to investigate the ferroptosis-related molecular markers in TNF-α-induced endothelial senescence. The microarray expression dataset (GSE195517) was used to identify the differently expressed ferroptosis-related genes (DEFRGs) through weighted gene co-expressed network analysis (WGCNA). GO and KEGG were performed to explore the biological function. Furthermore, hub genes were identified after protein-protein interaction (PPI) analysis and validated through real-time qPCR (RT-qPCR). Then, a drug-gene network was established to predict potential drugs for the hub genes. Seven DEFRGs were recognized in the TNF-α-induced HUVEC senescence. Moreover, four hub genes (PTGS2, TNFAIP3, CXCL2, and IL6 are upregulated) were identified by PPI analysis and validated by RT-qPCR. Further analysis exhibited that PTGS2 was subcellularly located in the plasma membrane. Furthermore, after aminosalicylic acid (ASA) was identified as ferroptosis inhibitor for targeting PTGS2 in senescent HUVECs, 5-ASA and 4-ASA were verified to alleviate TNF-α-induced HUVEC senescence through ferroptosis. PTGS2 might play a role in TNF-α-induced HUVEC senescence and ASA may be the potential drug for alleviating TNF-α-induced HUVEC senescence through ferroptosis.

摘要

已有大量证据表明细胞衰老与铁死亡之间存在相互作用。本研究旨在探讨 TNF-α诱导的内皮细胞衰老中与铁死亡相关的分子标志物。通过加权基因共表达网络分析(WGCNA),使用微阵列表达数据集(GSE195517)鉴定差异表达的铁死亡相关基因(DEFRGs)。进行 GO 和 KEGG 分析以探索生物学功能。此外,通过蛋白质-蛋白质相互作用(PPI)分析鉴定了枢纽基因,并通过实时 qPCR(RT-qPCR)进行了验证。然后,建立了药物-基因网络来预测枢纽基因的潜在药物。在 TNF-α诱导的 HUVEC 衰老中识别出 7 个 DEFRGs。此外,通过 PPI 分析鉴定了 4 个枢纽基因(PTGS2、TNFAIP3、CXCL2 和 IL6 上调),并通过 RT-qPCR 进行了验证。进一步的分析表明,PTGS2 位于质膜的亚细胞区室中。此外,在鉴定出氨基水杨酸钠(ASA)作为针对衰老 HUVEC 中 PTGS2 的铁死亡抑制剂后,5-ASA 和 4-ASA 被验证可通过铁死亡减轻 TNF-α诱导的 HUVEC 衰老。PTGS2 可能在内皮细胞衰老中起作用,ASA 可能是通过铁死亡缓解 TNF-α诱导的内皮细胞衰老的潜在药物。

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