基于M2巨噬细胞相关基因的风险评分模型预测乙型肝炎病毒相关肝细胞癌的预后

[A risk scoring model based on M2 macrophage-related genes for predicting prognosis of HBV-related hepatocellular carcinoma].

作者信息

Liu P, Lou L, Liu X, Wang J, Jiang Y

机构信息

Academy of Military Medical Sciences, Academy of Military Sciences, Beijing 102206, China.

出版信息

Nan Fang Yi Ke Da Xue Xue Bao. 2024 May 20;44(5):827-840. doi: 10.12122/j.issn.1673-4254.2024.05.04.

Abstract

OBJECTIVE

To investigate the prognostic value of M2 macrophage-related genes (MRG) in hepatitis B virus (HBV)- related hepatocellular carcinoma (HCC).

METHODS

The transcriptome data of 73 patients with HBV-related HCC were obtained from TCGA database, and the MRG modules were identified by WGCNA. The MRG-based risk scoring model was constructed by LASSO regression analysis and validated using an external dataset. The correlation of the risk score with immune cell infiltration and drug sensitivity of HCC were analyzed with CIBERSORT and R. pRRophetic. The signaling pathways of the differential genes between the high- and low-risk groups were investigated using GSVA and GSEA enrichment analyses, and MRG expressions at the single cell level were validated using R.Seurat. The cell interaction intensity was analyzed by R.Cellchat to identify important cell types related to HCC progression. MRG expression levels were detected by RT-qPCR in THP-1 cells with HCC-conditioned medium-induced M2 polarization and in HBV-positive HCC cells.

RESULTS

A high M2 macrophage infiltration level was significantly correlated with a poor prognosis of HCC, and 5 hub MRG (VTN, GCLC, PARVB, TRIM27, and GMPR) were identified. The overall survival of HCC patients was significantly lower in the high-risk than in the low-risk group. The high- and the low-risk groups showed significant enrichment of M2 macrophages and na?ve B cells, respectively, and were sensitive to BI. 2536 and to AG. 014699, AKT. inhibitor. Ⅷ, AZD. 0530, AZD7762, and BMS. 708163, respectively. The proliferation-related and metabolism-related pathways were enriched in the high-risk group, where monocytes showed the most active cell interactions during HCC progression. VTN was significantly upregulated in HCC cell lines, while GCLC, PARVB, TRIM27, and GMPR were upregulated in M2 THP-1 cells.

CONCLUSION

The MRG-based risk scoring model can accurately predict the prognosis of HBV-related HCC and reveal the differences in tumor microenvironment to guide precision treatment of the patients.

摘要

目的

探讨M2巨噬细胞相关基因(MRG)在乙型肝炎病毒(HBV)相关肝细胞癌(HCC)中的预后价值。

方法

从TCGA数据库获取73例HBV相关HCC患者的转录组数据,通过加权基因共表达网络分析(WGCNA)鉴定MRG模块。通过套索回归分析构建基于MRG的风险评分模型,并使用外部数据集进行验证。用CIBERSORT和R.pRRophetic分析风险评分与HCC免疫细胞浸润及药物敏感性的相关性。使用基因集变异分析(GSVA)和基因集富集分析(GSEA)研究高、低风险组间差异基因的信号通路,并使用R.Seurat验证单细胞水平的MRG表达。通过R.Cellchat分析细胞间相互作用强度,以识别与HCC进展相关的重要细胞类型。在经HCC条件培养基诱导M2极化的THP-1细胞和HBV阳性HCC细胞中,通过逆转录定量聚合酶链反应(RT-qPCR)检测MRG表达水平。

结果

M2巨噬细胞浸润水平高与HCC预后差显著相关,鉴定出5个关键MRG(Vtn、Gclc、Parvb、Trim27和Gmpr)。HCC患者的总生存期在高风险组显著低于低风险组。高、低风险组分别显示M2巨噬细胞和初始B细胞显著富集,且分别对BI.2536和AG.014699、AKT抑制剂Ⅷ、AZD.0530、AZD7762和BMS.708163敏感。增殖相关和代谢相关通路在高风险组中富集,其中单核细胞在HCC进展过程中表现出最活跃的细胞间相互作用。Vtn在HCC细胞系中显著上调,而Gclc、Parvb、Trim27和Gmpr在M2 THP-1细胞中上调。

结论

基于MRG的风险评分模型可准确预测HBV相关HCC的预后,并揭示肿瘤微环境差异以指导患者的精准治疗。

相似文献

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索