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新型含磺酰胺基团的吡唑甲酰胺作为高效碳酸酐酶抑制剂的合成、分子对接和分子动力学模拟、类药性研究、ADMET预测及生物学评价

Synthesis, molecular docking and molecular dynamics simulations, drug-likeness studies, ADMET prediction and biological evaluation of novel pyrazole-carboxamides bearing sulfonamide moiety as potent carbonic anhydrase inhibitors.

作者信息

Yetek İrfan, Mert Samet, Tunca Ekrem, Bayrakdar Alpaslan, Kasımoğulları Rahmi

机构信息

Department of Chemistry, Faculty of Arts and Sciences, Dumlupınar University, Kütahya, 43100, Türkiye.

Department of Biochemistry, Faculty of Arts and Sciences, Dumlupınar University, Kütahya, 43100, Türkiye.

出版信息

Mol Divers. 2025 Apr;29(2):1207-1227. doi: 10.1007/s11030-024-10901-0. Epub 2024 Jun 13.

DOI:10.1007/s11030-024-10901-0
PMID:38869737
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11909088/
Abstract

Pyrazoles are unique bioactive molecules with a versatile biological profile and they have gained an important place on pharmaceutical chemistry. Pyrazole compounds containing sulfonamide nuclei also attract attention as carbonic anhydrase (CA) inhibitors. In this study, a library of pyrazole-carboxamides were synthesized and the structures of the synthesized molecules were characterized using FT-IR, H-NMR, C-NMR and HRMS. Then the inhibition effects of newly synthesized molecules on human erythrocyte hCA I and hCA II isoenzymes were investigated. K values of the compounds were in the range of 0.063-3.368 µM for hCA I and 0.007-4.235 µM for hCA II. Molecular docking studies were performed between the most active compounds 6a, 6b and the reference inhibitor, acetazolamide (AAZ) and the hCA I and hCA II receptors to investigate the binding mechanisms between the compounds and the receptors. These compounds showed better interactions than the AAZ. ADMET analyzes were performed for the compounds and it was seen that the compounds did not show AMES toxicity. The stability of the molecular docking results over time was analysed by 50 ns molecular dynamics simulations. Molecular dynamics simulations revealed that 6a and 6b exhibited good stability after docking to the binding sites of hCA I and hCA II receptors, with minor conformational changes and fluctuations.

摘要

吡唑是一类独特的生物活性分子,具有多样的生物学特性,在药物化学领域占据重要地位。含磺酰胺核的吡唑化合物作为碳酸酐酶(CA)抑制剂也备受关注。在本研究中,合成了一系列吡唑 - 羧酰胺,并通过傅里叶变换红外光谱(FT - IR)、氢核磁共振谱(H - NMR)、碳核磁共振谱(C - NMR)和高分辨质谱(HRMS)对合成分子的结构进行了表征。然后研究了新合成分子对人红细胞hCA I和hCA II同工酶的抑制作用。这些化合物对hCA I的K值在0.063 - 3.368 μM范围内,对hCA II的K值在0.007 - 4.235 μM范围内。对活性最高的化合物6a、6b与参考抑制剂乙酰唑胺(AAZ)以及hCA I和hCA II受体进行了分子对接研究,以探究化合物与受体之间的结合机制。这些化合物表现出比AAZ更好的相互作用。对这些化合物进行了药物代谢动力学(ADMET)分析,发现它们没有显示出AMES毒性。通过50纳秒的分子动力学模拟分析了分子对接结果随时间的稳定性。分子动力学模拟表明,6a和6b对接至hCA I和hCA II受体的结合位点后表现出良好的稳定性,构象变化和波动较小。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/0c490f29adfc/11030_2024_10901_Fig10_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/8017c9a47b94/11030_2024_10901_Fig4_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/0c7137c4cd8a/11030_2024_10901_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/fcbb359a6e38/11030_2024_10901_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/3772ffd90685/11030_2024_10901_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/0c490f29adfc/11030_2024_10901_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/9bd5def22af8/11030_2024_10901_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/8e5ab8db8a80/11030_2024_10901_Sch1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/c0c86542827c/11030_2024_10901_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/2f8b8d0fcae5/11030_2024_10901_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/8017c9a47b94/11030_2024_10901_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/d91c9bbca513/11030_2024_10901_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/e9301b03e6c8/11030_2024_10901_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/0c7137c4cd8a/11030_2024_10901_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/fcbb359a6e38/11030_2024_10901_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/3772ffd90685/11030_2024_10901_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3127/11909088/0c490f29adfc/11030_2024_10901_Fig10_HTML.jpg

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