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基于线粒体基因构建和验证前列腺癌预后模型。

Construction and Validation of a Prognostic Model Based on Mitochondrial Genes in Prostate Cancer.

机构信息

Radiology, The First Affiliated Hospital of Yangtze University, Jingzhou, China.

Urology, The First Affiliated Hospital of Yangtze University, Jingzhou, China.

出版信息

Horm Metab Res. 2024 Nov;56(11):807-817. doi: 10.1055/a-2330-3696. Epub 2024 Jun 13.

Abstract

This study attempted to build a prostate cancer (PC) prognostic risk model with mitochondrial feature genes. PC-related MTGs were screened for Cox regression analyses, followed by establishing a prognostic model. Model validity was analyzed via survival analysis and receiver operating characteristic (ROC) curves, and model accuracy was validated in the GEO dataset. Combining risk score with clinical factors, the independence of the risk score was verified by using Cox analysis, followed by generating a nomogram. The Gleason score, microsatellite instability (MSI), immune microenvironment, and tumor mutation burden were analyzed in two risk groups. Finally, the prognostic feature genes were verified through a q-PCR test. Ten PC-associated MTGs were screened, and a prognostic model was built. Survival analysis and ROC curves illustrated that the model was a good predictor for the risk of PC. Cox regression analysis revealed that risk score acted as an independent prognostic factor. The Gleason score and MSI in the high-risk group were substantially higher than in the low-risk group. Levels of ESTIMATE Score, Immune Score, Stromal Score, immune cells, immune function, immune checkpoint, and immunopheno score of partial immune checkpoints in the high-risk group were significantly lower than in the low-risk group. Genes with the highest mutation frequencies in the two groups were SPOP, TTN, and TP53. The q-PCR results of the feature genes were consistent with the gene expression results in the database. The 10-gene model based on MTGs could accurately predict the prognosis of PC patients and their responses to immunotherapy.

摘要

本研究试图构建一个基于线粒体特征基因的前列腺癌(PC)预后风险模型。通过 Cox 回归分析筛选与 PC 相关的 MTG,然后建立预后模型。通过生存分析和接收者操作特征(ROC)曲线分析模型的有效性,并在 GEO 数据集上验证模型的准确性。通过 Cox 分析结合风险评分和临床因素,验证风险评分的独立性,然后生成列线图。在两个风险组中分析了 Gleason 评分、微卫星不稳定性(MSI)、免疫微环境和肿瘤突变负荷。最后,通过 q-PCR 测试验证了预后特征基因。筛选出 10 个与 PC 相关的 MTG,并构建了一个预后模型。生存分析和 ROC 曲线表明,该模型是 PC 风险的良好预测因子。Cox 回归分析表明,风险评分是一个独立的预后因素。高危组的 Gleason 评分和 MSI 明显高于低危组。高危组的 ESTIMATE 评分、免疫评分、基质评分、免疫细胞、免疫功能、免疫检查点和部分免疫检查点的免疫表型评分显著低于低危组。两组中突变频率最高的基因是 SPOP、TTN 和 TP53。特征基因的 q-PCR 结果与数据库中的基因表达结果一致。基于 MTG 的 10 基因模型可以准确预测 PC 患者的预后及其对免疫治疗的反应。

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