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ι-卡拉胶降解由海洋细菌 LL1 中的关键硫酸酯酶启动。

ι-Carrageenan catabolism is initiated by key sulfatases in the marine bacterium LL1.

机构信息

College of Marine Life Sciences, Ocean University of China, Qingdao, China.

MOE Key Laboratory of Evolution and Marine Biodiversity, Qingdao, China.

出版信息

Appl Environ Microbiol. 2024 Jul 24;90(7):e0025524. doi: 10.1128/aem.00255-24. Epub 2024 Jun 14.

Abstract

Marine bacteria contribute substantially to cycle macroalgae polysaccharides in marine environments. Carrageenans are the primary cell wall polysaccharides of red macroalgae. The carrageenan catabolism mechanism and pathways are still largely unclear. is a representative bacterial genus that can utilize carrageenan. We previously isolated the strain LL1 that could grow on ι-carrageenan but produce no ι-carrageenase. Here, through a combination of bioinformatic, biochemical, and genetic analyses, we determined that LL1 processed a desulfurization-depolymerization sequential pathway for ι-carrageenan utilization, which was initiated by key sulfatases PhSulf1 and PhSulf2. PhSulf2 acted as an endo/exo-G4S (4-O-sulfation-β-D-galactopyranose) sulfatase, while PhSulf1 was identified as a novel endo-DA2S sulfatase that could function extracellularly. Because of the unique activity of PhSulf1 toward ι-carrageenan rather than oligosaccharides, LL1 was considered to have a distinct ι-carrageenan catabolic pathway compared to other known ι-carrageenan-degrading bacteria, which mainly employ multifunctional G4S sulfatases and exo-DA2S (2-O-sulfation-3,6-anhydro-α-D-galactopyranose) sulfatase for sulfate removal. Furthermore, we detected widespread occurrence of PhSulf1-encoding gene homologs in the global ocean, indicating the prevalence of such endo-acting DA2S sulfatases as well as the related ι-carrageenan catabolism pathway. This research provides valuable insights into the enzymatic processes involved in carrageenan catabolism within marine ecological systems.IMPORTANCECarrageenan is a type of linear sulfated polysaccharide that plays a significant role in forming cell walls of marine algae and is found extensively distributed throughout the world's oceans. To the best of our current knowledge, the ι-carrageenan catabolism in marine bacteria either follows the depolymerization-desulfurization sequential process initiated by ι-carrageenase or starts from the desulfurization step catalyzed by exo-acting sulfatases. In this study, we found that the marine bacterium LL1 processes a distinct pathway for ι-carrageenan catabolism employing a specific endo-acting DA2S-sulfatase PhSulf1 and a multifunctional G4S sulfatase PhSulf2. The unique PhSulf1 homologs appear to be widely present on a global scale, indicating the indispensable contribution of the marine bacteria containing the distinct ι-carrageenan catabolism pathway. Therefore, this study would significantly enrich our understanding of the molecular mechanisms underlying carrageenan utilization, providing valuable insights into the intricate roles of marine bacteria in polysaccharide cycling in marine environments.

摘要

海洋细菌在海洋环境中对大型藻类多糖的循环起着重要作用。卡拉胶是红藻细胞壁的主要多糖。卡拉胶的代谢机制和途径在很大程度上仍不清楚。 是一种可以利用卡拉胶的代表性细菌属。我们之前分离出了可以在 ι-卡拉胶上生长但不产生 ι-卡拉胶酶的菌株 LL1。在这里,我们通过生物信息学、生化和遗传分析的结合,确定 LL1 对 ι-卡拉胶的利用采用了脱硫-解聚的顺序途径,该途径由关键的硫酸盐酶 PhSulf1 和 PhSulf2 启动。PhSulf2 是一种内切/外切 G4S(4-O-硫酸-β-D-半乳糖吡喃糖)硫酸酯酶,而 PhSulf1 被鉴定为一种新型的内切 DA2S 硫酸酯酶,可在细胞外发挥作用。由于 PhSulf1 对 ι-卡拉胶而非寡糖的独特活性,与其他已知的 ι-卡拉胶降解细菌相比,LL1 被认为具有独特的 ι-卡拉胶代谢途径,后者主要采用多功能 G4S 硫酸酯酶和外切 DA2S(2-O-硫酸化-3,6-脱水-α-D-半乳糖吡喃糖)硫酸酯酶进行硫酸根去除。此外,我们在全球海洋中检测到广泛存在的 PhSulf1 编码基因同源物,表明存在这种具有内活性的 DA2S 硫酸酯酶以及相关的 ι-卡拉胶代谢途径。这项研究为了解海洋生态系统中卡拉胶代谢的酶促过程提供了有价值的见解。

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