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探究 GPR183 受体的激活机制。

Exploring the Activation Mechanism of the GPR183 Receptor.

机构信息

School of Life and Health Sciences, School of Medicine, The Chinese University of Hong Kong, Shenzhen, Guangdong 518172, PR China.

Warshel Institute for Computational Biology, Shenzhen, Guangdong 518172, PR China.

出版信息

J Phys Chem B. 2024 Jun 27;128(25):6071-6081. doi: 10.1021/acs.jpcb.4c02812. Epub 2024 Jun 15.

DOI:10.1021/acs.jpcb.4c02812
PMID:38877985
Abstract

The G protein-coupled receptors (GPCRs) play a pivotal role in numerous biological processes as crucial cell membrane receptors. However, the dynamic mechanisms underlying the activation of GPR183, a specific GPCR, remain largely elusive. To address this, we employed computational simulation techniques to elucidate the activation process and key events associated with GPR183, including conformational changes from inactive to active state, binding interactions with the G protein complex, and GDP release. Our findings demonstrate that the association between GPR183 and the G protein involves the formation of receptor-specific conformations, the gradual proximity of the G protein to the binding pocket, and fine adjustments of the protein conformation, ultimately leading to a stable GPR183-G complex characterized by a high energy barrier. The presence of G protein partially promotes GPR183 activation, which is consistent with the observation of GPCR constitutive activity test experiments, thus illustrating the reliability of our calculations. Moreover, our study suggests the existence of a stable partially activated state preceding complete activation, providing novel avenues for future investigations. In addition, the relevance of GPR183 for various diseases, such as colitis, the response of eosinophils to infection, antiviral properties, and pulmonary inflammation, has been emphasized, underscoring its therapeutic potential. Consequently, understanding the activation process of GPR183 through molecular dynamic simulations offers valuable kinetic insights that can aid in the development of targeted therapies.

摘要

G 蛋白偶联受体(GPCRs)作为重要的细胞膜受体,在许多生物过程中发挥着关键作用。然而,特定 GPCR 之一 GPR183 的激活机制在很大程度上仍难以捉摸。为了解决这个问题,我们采用计算模拟技术来阐明 GPR183 的激活过程和关键事件,包括从非活性状态到活性状态的构象变化、与 G 蛋白复合物的结合相互作用以及 GDP 释放。我们的研究结果表明,GPR183 与 G 蛋白的结合涉及到受体特异性构象的形成、G 蛋白逐渐接近结合口袋以及蛋白质构象的精细调整,最终导致以高能量壁垒为特征的稳定 GPR183-G 复合物的形成。G 蛋白的存在部分促进了 GPR183 的激活,这与 GPCR 组成型活性测试实验的观察结果一致,从而说明了我们计算的可靠性。此外,我们的研究还表明,在完全激活之前存在一个稳定的部分激活状态,为未来的研究提供了新的途径。此外,还强调了 GPR183 与各种疾病的相关性,如结肠炎、嗜酸性粒细胞对 感染的反应、抗病毒特性和肺炎症,突出了其治疗潜力。因此,通过分子动力学模拟来理解 GPR183 的激活过程可以提供有价值的动力学见解,有助于开发靶向治疗方法。

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