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进化追踪分析其原核同源物 HchA 表明帕金森病致病因子 DJ-1 的酯酶活性起源。

The origin of esterase activity of Parkinson's disease causative factor DJ-1 implied by evolutionary trace analysis of its prokaryotic homolog HchA.

机构信息

Division of Advanced Pathophysiological Science, Department of Biomolecular Pathogenesis, Medical Research Institute, Tokyo Medical and Dental University, Bunkyo, Tokyo, Japan.

Cellular and Molecular Biotechnology Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Koto, Tokyo, Japan; Global Research and Development Center for Business by Quantum-AI Technology (G-QuAT), National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki, Japan.

出版信息

J Biol Chem. 2024 Jul;300(7):107476. doi: 10.1016/j.jbc.2024.107476. Epub 2024 Jun 13.

DOI:10.1016/j.jbc.2024.107476
PMID:38879013
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11301059/
Abstract

DJ-1, a causative gene for hereditary recessive Parkinsonism, is evolutionarily conserved across eukaryotes and prokaryotes. Structural analyses of DJ-1 and its homologs suggested the 106th Cys is a nucleophilic cysteine functioning as the catalytic center of hydratase or hydrolase activity. Indeed, DJ-1 and its homologs can convert highly electrophilic α-oxoaldehydes such as methylglyoxal into α-hydroxy acids as hydratase in vitro, and oxidation-dependent ester hydrolase (esterase) activity has also been reported for DJ-1. The mechanism underlying such plural activities, however, has not been fully characterized. To address this knowledge gap, we conducted a series of biochemical assays assessing the enzymatic activity of DJ-1 and its homologs. We found no evidence for esterase activity in any of the Escherichia coli DJ-1 homologs. Furthermore, contrary to previous reports, we found that oxidation inactivated rather than facilitated DJ-1 esterase activity. The E. coli DJ-1 homolog HchA possesses phenylglyoxalase and methylglyoxalase activities but lacks esterase activity. Since evolutionary trace analysis identified the 186th H as a candidate residue involved in functional differentiation between HchA and DJ-1, we focused on H186 of HchA and found that an esterase activity was acquired by H186A mutation. Introduction of reverse mutations into the equivalent position in DJ-1 (A107H) selectively eliminated its esterase activity without compromising α-oxoaldehyde hydratase activity. The obtained results suggest that differences in the amino acid sequences near the active site contributed to acquisition of esterase activity in vitro and provide an important clue to the origin and significance of DJ-1 esterase activity.

摘要

DJ-1 是一种遗传性隐性帕金森病的致病基因,在真核生物和原核生物中都有保守进化。DJ-1 及其同源物的结构分析表明第 106 位半胱氨酸是亲核半胱氨酸,作为水合酶或水解酶活性的催化中心。事实上,DJ-1 和其同源物可以将高度亲电的α-氧代醛,如甲基乙二醛,转化为体外的α-羟基酸作为水合酶,并且 DJ-1 的氧化依赖性酯水解酶(酯酶)活性也有报道。然而,这种多种活性的机制尚未完全阐明。为了解决这一知识空白,我们进行了一系列生化测定,评估 DJ-1 和其同源物的酶活性。我们没有发现任何大肠杆菌 DJ-1 同源物具有酯酶活性的证据。此外,与之前的报道相反,我们发现氧化反而使 DJ-1 酯酶失活而不是促进其活性。大肠杆菌 DJ-1 同源物 HchA 具有苯乙二醛酶和甲基乙二醛酶活性,但缺乏酯酶活性。由于进化追踪分析确定第 186 位 H 是 HchA 和 DJ-1 之间功能分化的候选残基,我们专注于 HchA 的 H186,并发现 H186A 突变获得了酯酶活性。将反向突变引入 DJ-1 中等效位置(A107H)选择性地消除了其酯酶活性,而不影响α-氧代醛水合酶活性。获得的结果表明,活性位点附近的氨基酸序列差异导致了体外酯酶活性的获得,并为 DJ-1 酯酶活性的起源和意义提供了重要线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/4afe5417a6d3/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/2f55acb42d8e/gr1.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/fa9f8637c8b8/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/93ae0c504173/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/305297bccbd2/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/86679f866623/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/4afe5417a6d3/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/2f55acb42d8e/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/6493eec73d90/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/fa9f8637c8b8/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/93ae0c504173/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/305297bccbd2/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/86679f866623/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d697/11301059/4afe5417a6d3/gr7.jpg

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Nucleic Acids Res. 2024 Jan 5;52(D1):D808-D816. doi: 10.1093/nar/gkad1003.
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Protein Sci. 2023 May;32(5):e4641. doi: 10.1002/pro.4641.
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