Center of Excellence in Structural and Computational Biology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Program in Bioinformatics and Computational Biology, Graduate School, Chulalongkorn University, Bangkok 10330, Thailand.
Comput Biol Chem. 2024 Oct;112:108111. doi: 10.1016/j.compbiolchem.2024.108111. Epub 2024 Jun 1.
Oxyresveratrol (OXY), a natural stilbenoid in mulberry fruits, is known for its diverse pharmacological properties. However, its clinical use is hindered by low water solubility and limited bioavailability. In the present study, the inclusion complexes of OXY with β-cyclodextrin (βCD) and its three analogs, dimethyl-β-cyclodextrin (DMβCD), hydroxypropyl-β-cyclodextrin (HPβCD) and sulfobutylether-β-cyclodextrin (SBEβCD), were investigated using in silico and in vitro studies. Molecular docking revealed two binding orientations of OXY, namely, 4',6'-dihydroxyphenyl (A-form) and 5,7-benzenediol ring (B-form). Molecular Dynamics simulations suggested the formation of inclusion complexes with βCDs through two distinct orientations, with OXY/SBEβCD exhibiting maximum atom contacts and the lowest solvent-exposed area in the hydrophobic cavity. These results corresponded well with the highest binding affinity observed in OXY/SBEβCD when assessed using the MM/GBSA method. Beyond traditional simulation methods, Ligand-binding Parallel Cascade Selection Molecular Dynamics method was employed to investigate how the drug enters and accommodates within the hydrophobic cavity. The in silico results aligned with stability constants: SBEβCD (2060 M), HPβCD (1860 M), DMβCD (1700 M), and βCD (1420 M). All complexes exhibited a 1:1 binding mode (A type), with SBEβCD enhancing OXY solubility (25-fold). SEM micrographs, DSC thermograms, FT-IR and H NMR spectra confirm the inclusion complex formation, revealing novel surface morphologies, distinctive thermal behaviors, and new peaks. Notably, the inhibitory impact on the proliferation of breast cancer cell lines, MCF-7, exhibited by inclusion complexes particularly OXY/DMβCD, OXY/HPβCD, and OXY/SBEβCD were markedly superior compared to that of OXY alone.
氧白藜芦醇(OXY)是桑果中的一种天然芪类化合物,具有多种药理学特性。然而,由于其水溶性低和生物利用度有限,其临床应用受到限制。在本研究中,采用体内和体外研究方法研究了 OXY 与β-环糊精(βCD)及其三种类似物,即二甲基-β-环糊精(DMβCD)、羟丙基-β-环糊精(HPβCD)和磺丁基醚-β-环糊精(SBEβCD)的包合复合物。分子对接显示 OXY 有两种结合方式,即 4',6'-二羟基苯基(A 型)和 5,7-苯二酚环(B 型)。分子动力学模拟表明,OXY 与βCD 形成包合物的方式有两种,其中 OXY/SBEβCD 具有最大的原子接触数和疏水性腔内最低的溶剂暴露面积。这些结果与使用 MM/GBSA 方法评估时观察到的 OXY/SBEβCD 具有最高结合亲和力的结果非常吻合。除了传统的模拟方法外,还采用配体结合平行级联选择分子动力学方法研究了药物如何进入并容纳在疏水性腔内。体内结果与稳定常数一致:SBEβCD(2060 M)、HPβCD(1860 M)、DMβCD(1700 M)和βCD(1420 M)。所有复合物均表现出 1:1 的结合模式(A 型),其中 SBEβCD 可将 OXY 的溶解度提高 25 倍。SEM 显微照片、DSC 热图、FT-IR 和 H NMR 谱图证实了包合复合物的形成,揭示了新颖的表面形态、独特的热行为和新的峰。值得注意的是,与单独使用 OXY 相比,包合物特别是 OXY/DMβCD、OXY/HPβCD 和 OXY/SBEβCD 对乳腺癌细胞系 MCF-7 的增殖抑制作用明显增强。