Mahidol Wittayanusorn School, 364 Salaya, Phuttamonthon District, Nakhon Pathom 73170, Thailand.
Medicinal Plant Research Institute, Department of Medical Sciences, Ministry of Public Health, Nonthaburi 11000, Thailand.
Int J Mol Sci. 2024 May 24;25(11):5730. doi: 10.3390/ijms25115730.
Dipeptidyl peptidase-IV (DPPIV) inhibitory peptides are a class of antihyperglycemic drugs used in the treatment of type 2 diabetes mellitus, a metabolic disorder resulting from reduced levels of the incretin hormone GLP-1. Given that DPPIV degrades incretin, a key regulator of blood sugar levels, various antidiabetic medications that inhibit DPPIV, such as vildagliptin, sitagliptin, and linagliptin, are employed. However, the potential side effects of these drugs remain a matter of debate. Therefore, we aimed to investigate food-derived peptides from (hemp) seeds. Our developed bioinformatics pipeline was used to identify the putative hydrolyzed peptidome of three highly abundant proteins: albumin, edestin, and vicilin. These proteins were subjected to in silico digestion by different proteases (trypsin, chymotrypsin, and pepsin) and then screened for DPPIV inhibitory peptides using IDPPIV-SCM. To assess potential adverse effects, several prediction tools, namely, TOXINpred, AllerCatPro, and HemoPred, were employed to evaluate toxicity, allergenicity, and hemolytic effects, respectively. COPID was used to determine the amino acid composition. Molecular docking was performed using GalaxyPepDock and HPEPDOCK, 3D visualizations were conducted using the UCSF Chimera program, and MD simulations were carried out with AMBER20 MD software. Based on the predictive outcomes, FNVDTE from edestin and EAQPST from vicilin emerged as promising candidates for DPPIV inhibitors. We anticipate that our findings may pave the way for the development of alternative DPPIV inhibitors.
二肽基肽酶-IV(DPPIV)抑制肽是一类用于治疗 2 型糖尿病的抗高血糖药物,2 型糖尿病是一种代谢紊乱,源于肠降血糖素激素 GLP-1 水平降低。鉴于 DPPIV 降解肠降血糖素,这是血糖水平的关键调节剂,因此使用了各种抑制 DPPIV 的抗糖尿病药物,例如维格列汀、西他列汀和利拉利汀。然而,这些药物的潜在副作用仍然存在争议。因此,我们旨在研究(大麻)种子中的食品衍生肽。我们开发的生物信息学管道用于鉴定三种丰富蛋白质白蛋白、菜豆球蛋白和伴大豆球蛋白的假定水解肽组。这些蛋白质通过不同的蛋白酶(胰蛋白酶、糜蛋白酶和胃蛋白酶)进行计算机模拟消化,然后使用 IDPPIV-SCM 筛选 DPPIV 抑制肽。为了评估潜在的不良影响,使用了几种预测工具,即 TOXINpred、AllerCatPro 和 HemoPred,分别评估毒性、变应原性和溶血作用。使用 COPID 确定氨基酸组成。使用 GalaxyPepDock 和 HPEPDOCK 进行分子对接,使用 UCSF Chimera 程序进行 3D 可视化,使用 AMBER20 MD 软件进行 MD 模拟。根据预测结果,菜豆球蛋白中的 FNVDTE 和伴大豆球蛋白中的 EAQPST 被认为是有前途的 DPPIV 抑制剂候选物。我们预计,我们的研究结果可能为开发替代 DPPIV 抑制剂铺平道路。