Institute of Biotechnology and Environment, Tay Nguyen University, Buon Ma Thuot, Dak Lak, Vietnam.
J Basic Microbiol. 2024 Sep;64(9):e2400119. doi: 10.1002/jobm.202400119. Epub 2024 Jun 18.
This work aimed to isolate and characterize a novel chitin-degrading bacterium from Yok Don National Park, Vietnam, for crop production studies. Among the chitinolytic isolates, strain YSY-4.3 was selected, which grew rapidly and produced a large halo around the colony. 16S rDNA analysis indicated that the strain is a novel species in the genus Paenibacillus, and an in vitro evaluation showed that the strain produced phytohormones (IAA, GA3, and zeatin), biofilms, and siderophores; possessed cellulase; and exerted antifungal activity. The whole genome of the strain was 5,628,400 bp with 49.3% GC content, 5056 coding sequences, 48 tRNA, and 1 rRNA. It shared the highest values of digital DNA-DNA hybridization (67.4%) and average nucleotide identity (89.54%) with those of Paenibacillus woosongensis B2_4 (CP126084.1), suggesting a novel species. Of the coding sequences, 4287 proteins were identified by COG, and 2561 were assigned by KEGG. The genome contained at least 51 genes involved in plant growth and resistance to heavy-metal toxicity and 359 carbohydrate-active enzymes. The chitinolytic system of the strain was composed of 15 enzymes, among them, PsChiC, which contained a GH18 catalytic domain and a GH5 catalytic domain, had not been previously reported. In addition, the genome possessed 15 gene clusters encoding antimicrobial metabolites, 10 of which are possible novel clusters. This study expands knowledge regarding novel chitinolytic bacteria from Yok Don National Park and provides a valuable gene resource for future studies.
本研究旨在从越南约顿国家公园中分离和鉴定一种新型的用于作物生产研究的几丁质降解细菌。在几丁质降解菌中,选择了生长迅速且在菌落周围产生大晕圈的菌株 YSY-4.3。16S rDNA 分析表明,该菌株是新棒状杆菌属的一个新种,体外评价表明该菌株产生植物激素(IAA、GA3 和玉米素)、生物膜和铁载体;具有纤维素酶活性;并表现出抗真菌活性。该菌株的全基因组为 5628400bp,GC 含量为 49.3%,包含 5056 个编码序列、48 个 tRNA 和 1 个 rRNA。与保藏号为 CP126084.1 的沃松氏新棒状杆菌 B2_4 的数字 DNA-DNA 杂交值(67.4%)和平均核苷酸同一性(89.54%)最高,表明这是一个新种。在这些编码序列中,通过 COG 鉴定出 4287 种蛋白质,通过 KEGG 鉴定出 2561 种蛋白质。基因组中至少包含 51 个与植物生长和抗重金属毒性相关的基因,以及 359 种碳水化合物活性酶。该菌株的几丁质降解系统由 15 种酶组成,其中,PsChiC 含有 GH18 催化结构域和 GH5 催化结构域,这是以前没有报道过的。此外,基因组还包含 15 个编码抗菌代谢物的基因簇,其中 10 个可能是新的基因簇。本研究扩展了关于约顿国家公园新型几丁质降解细菌的知识,为未来的研究提供了有价值的基因资源。