NEUROFARBA Department, Sezione di Scienze Farmaceutiche, University of Florence, Via Ugo Schiff 6, 50019, Sesto Fiorentino, Florence, Italy.
Department of Biology, Agriculture and Food Sciences, Institute of Biosciences and Bioresources, CNR, Via Pietro Castellino 111, 80131, Napoli, Italy.
Arch Biochem Biophys. 2024 Aug;758:110074. doi: 10.1016/j.abb.2024.110074. Epub 2024 Jun 25.
Silicase, an enzyme that catalyzes the hydrolysis of silicon-oxygen bonds, is a crucial player in breaking down silicates into silicic acid, particularly in organisms like aquatic sponges with siliceous skeletons. Despite its significance, our understanding of silicase remains limited. This study comprehensively examines silicase from the demosponge Suberites domuncula, focusing on its kinetics toward CO as a substrate, as well as its silicase and esterase activity. It investigates inhibition and activation profiles with a range of inhibitors and activators belonging to various classes. By comparing its esterase activity to human carbonic anhydrase II, we gain insights into its enzymatic properties. Moreover, we investigate silicase's inhibition and activation profiles, providing valuable information for potential applications. We explore the evolutionary relationship of silicase with related enzymes, revealing potential functional roles in biological systems. Additionally, we propose a biochemical mechanism through three-dimensional modeling, shedding light on its catalytic mechanisms and structural features for both silicase activity and CO hydration. We highlight nature's utilization of enzymatic expertise in silica metabolism. This study enhances our understanding of silicase and contributes to broader insights into ecosystem functioning and Earth's geochemical cycles, emphasizing the intricate interplay between biology and the environment.
硅酶是一种催化硅氧键水解的酶,在将硅酸盐分解为硅酸的过程中起着关键作用,特别是在具有硅质骨骼的水生海绵等生物中。尽管硅酶具有重要意义,但我们对它的了解仍然有限。本研究全面研究了来自寻常海绵(Suberites domuncula)的硅酶,重点研究了其作为底物的 CO 动力学,以及它的硅酶和酯酶活性。它研究了一系列抑制剂和激活剂对其抑制和激活特性的影响,这些抑制剂和激活剂属于不同的类别。通过将其酯酶活性与人类碳酸酐酶 II 进行比较,我们深入了解了其酶学特性。此外,我们还研究了硅酶的抑制和激活特性,为潜在的应用提供了有价值的信息。我们探讨了硅酶与相关酶的进化关系,揭示了其在生物系统中的潜在功能作用。此外,我们通过三维建模提出了一种生化机制,阐明了其催化机制和结构特征,既包括硅酶活性,也包括 CO 水合作用。我们强调了自然界在硅质代谢中利用酶学专业知识的方式。本研究增进了我们对硅酶的理解,并为更广泛地了解生态系统功能和地球的地球化学循环提供了帮助,突出了生物学和环境之间错综复杂的相互作用。