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基于活性物种的邻近组学

Proximitomics by Reactive Species.

作者信息

Zhang Shaoran, Tang Qi, Zhang Xu, Chen Xing

机构信息

College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, People's Republic of China.

Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, People's Republic of China.

出版信息

ACS Cent Sci. 2024 Jun 12;10(6):1135-1147. doi: 10.1021/acscentsci.4c00373. eCollection 2024 Jun 26.

Abstract

The proximitome is defined as the entire collection of biomolecules spatially in the proximity of a biomolecule of interest. More broadly, the concept of the proximitome can be extended to the totality of cells proximal to a specific cell type. Since the spatial organization of biomolecules and cells is essential for almost all biological processes, proximitomics has recently emerged as an active area of scientific research. One of the growing strategies for proximitomics leverages reactive species-which are generated in situ and spatially confined, to chemically tag and capture proximal biomolecules and cells for systematic analysis. In this Outlook, we summarize different types of reactive species that have been exploited for proximitomics and discuss their pros and cons for specific applications. In addition, we discuss the current challenges and future directions of this exciting field.

摘要

近端蛋白质组被定义为在感兴趣的生物分子空间邻近区域内的所有生物分子的集合。更广泛地说,近端蛋白质组的概念可以扩展到特定细胞类型近端的所有细胞。由于生物分子和细胞的空间组织对于几乎所有生物过程都至关重要,近端蛋白质组学最近已成为一个活跃的科学研究领域。近端蛋白质组学中一种不断发展的策略利用原位产生且空间受限的活性物质,对邻近的生物分子和细胞进行化学标记和捕获,以便进行系统分析。在本展望文章中,我们总结了已被用于近端蛋白质组学的不同类型的活性物质,并讨论了它们在特定应用中的优缺点。此外,我们还讨论了这个令人兴奋的领域当前面临的挑战和未来的发展方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3fed/11212136/7c3d30a29f6b/oc4c00373_0001.jpg

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