Department of Physics, Sri Manakula Vinayagar Engineering College, Madagadipet, Puducherry 605107, India.
Department of Physics, Sri Manakula Vinayagar Engineering College, Madagadipet, Puducherry 605107, India.
Spectrochim Acta A Mol Biomol Spectrosc. 2024 Nov 15;321:124737. doi: 10.1016/j.saa.2024.124737. Epub 2024 Jun 30.
The molecule of 2-Biphenyl Carboxylic Acid (2BCA), which contains peculiar features, was explored making use of density functional theory (DFT) and experimental approaches in the area of quantum computational research. The optimised structure, atomic charges, vibrational frequencies, electrical properties, electrostatic potential surface (ESP), natural bond orbital analysis and potential energy surface (PES) were obtained applying the B3LYP approach with the 6-311++ G (d,p) basis set.. The 2BCA molecule was examined for possible conformers using a PES scan. The methods applied for spectral analyses included FT-IR, FT-RAMAN, NMR, and UV-Vis results. Vibrational frequencies for all typical modes of vibration were found using the Potential Energy Distribution (PED) data. The UV-Vis spectrum was simulated using the TD-DFT technique, which is also seen empirically. The Gauge-Invariant Atomic Orbital (GIAO) approach was employed to model and study the C and H NMR spectra of the 2BCA molecule in a CDCL3 solution. The spectra were then exploited experimentally to establish their chemical shifts. To predict the donor and acceptor interaction, the NBO analysis was used. The electrostatic potential surface was employed to anticipate the locations of nucleophilic and electrophilic sites. Hirshfeld surfaces and their related fingerprint plots are exploited for the investigation of intermolecular interactions. Reduced Density Gradient (RDG) helps to measure and illustrate electron correlation effects, offering precise insights into chemical bonding, reactivity, and the electronic structure of 2BCA. According to Lipinski and Veber's drug similarity criteria, 2BCA exhibits the typical physicochemical and pharmacokinetic properties that make it a potential oral pharmaceutical candidate. According to the findings of a molecular docking study, the 2BCA molecule has promise as a treatment agent for the Nipah virus (PDB ID: 6 EB9), which causes severe respiratory and neurological symptoms in humans.
使用密度泛函理论(DFT)和量子计算研究领域的实验方法,探索了具有特殊特征的 2-联苯羧酸(2BCA)分子。利用 B3LYP 方法和 6-311++G(d,p)基组,得到了优化的结构、原子电荷、振动频率、电特性、静电势面(ESP)、自然键轨道分析和势能面(PES)。通过 PES 扫描检查 2BCA 分子的可能构象。光谱分析方法包括 FT-IR、FT-RAMAN、NMR 和 UV-Vis 结果。使用势能分布(PED)数据,对所有典型振动模式的振动频率进行了研究。使用 TD-DFT 技术模拟了 UV-Vis 光谱,这也在经验上得到了验证。采用 Gauge-Invariant Atomic Orbital(GIAO)方法对 2BCA 分子在 CDCL3 溶液中的 C 和 H NMR 光谱进行建模和研究。然后通过实验利用这些光谱来确定它们的化学位移。为了预测供体和受体的相互作用,使用了 NBO 分析。静电势面用于预测亲核和亲电位点的位置。利用 Hirshfeld 表面及其相关的指纹图来研究分子间的相互作用。电子相关效应的测量和说明采用简化密度梯度(RDG)方法,为 2BCA 的化学键、反应性和电子结构提供了精确的见解。根据 Lipinski 和 Veber 的药物相似性标准,2BCA 具有典型的物理化学和药代动力学性质,使其成为一种有潜力的口服药物候选物。根据分子对接研究的结果,2BCA 分子有望成为尼帕病毒(PDB ID:6EB9)的治疗剂,该病毒会导致人类严重的呼吸道和神经系统症状。