Department of Plant Molecular Biology, University of Delhi South Campus, Benito Juarez Road, Dhaula Kuan, New Delhi, 110021, India; Department of Botany, Hansraj College, University of Delhi, Delhi, 110007, India.
Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, New Delhi, 110019, India.
Plant Physiol Biochem. 2024 Sep;214:108892. doi: 10.1016/j.plaphy.2024.108892. Epub 2024 Jun 27.
With the advent of transcriptomic techniques involving single-stranded RNA sequencing and chromatin isolation by RNA purification-based sequencing, transcriptomic studies of coding and non-coding RNAs have been executed efficiently. These studies acknowledged the role of non-coding RNAs in modulating gene expression. Long non-coding RNAs (lncRNAs) are a kind of non-coding RNAs having lengths of >200 nucleotides, playing numerous roles in plant developmental processes such as photomorphogenesis, epigenetic changes, reproductive tissue development, and in regulating biotic and abiotic stresses. Epigenetic changes further control gene expression by changing their state to "ON-OFF" and also regulate stress memory and its transgenerational inheritance. With well-established regulatory mechanisms, they act as guides, scaffolds, signals, and decoys to modulate gene expression. They act as a major operator of post-transcriptional modifications such as histone and epigenetic modifications, and DNA methylations. The review elaborates on the roles of lncRNAs in plant immunity and also discusses how epigenetic markers alter gene expression in response to pest/pathogen attack and influences chromatin-associated stress memory as well as transgenerational inheritance of epigenetic imprints in plants. The review further summarizes some research studies on how histone modifications and DNA methylations resist pathogenic and pest attacks by activating defense-related genes.
随着涉及单链 RNA 测序和基于 RNA 纯化的染色质分离的转录组技术的出现,对编码和非编码 RNA 的转录组研究已经得到了有效开展。这些研究肯定了非编码 RNA 在调节基因表达中的作用。长非编码 RNA(lncRNA)是一种长度大于 200 个核苷酸的非编码 RNA,在植物发育过程中发挥着多种作用,如光形态发生、表观遗传变化、生殖组织发育以及调节生物和非生物胁迫等。表观遗传变化通过将其状态从“开-关”改变来进一步控制基因表达,并调节胁迫记忆及其跨代遗传。通过成熟的调控机制,它们可以作为向导、支架、信号和诱饵来调节基因表达。它们作为转录后修饰(如组蛋白和表观遗传修饰、DNA 甲基化)的主要调控因子发挥作用。该综述详细阐述了 lncRNA 在植物免疫中的作用,并讨论了表观遗传标记如何通过改变基因表达来响应害虫/病原体的攻击,以及影响与染色质相关的胁迫记忆和植物中表观遗传印记的跨代遗传。该综述还总结了一些关于组蛋白修饰和 DNA 甲基化如何通过激活防御相关基因来抵抗病原体和害虫攻击的研究。