Mallick Subhasish, Agmon Noam
The Fritz Haber Research Center, Institute of Chemistry, The Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Phys Chem Chem Phys. 2024 Jul 17;26(28):19433-19449. doi: 10.1039/d3cp04112c.
Biological membranes isolate living cells from their environment, while allowing selective molecular transport between the inner and outer realms. For example, Na and K permeability through ionic channels contributes to neural conduction. Whether the ionic currents arise directly from cations in the bulk, or from the interface, is currently unclear. There are only scant results concerning lateral diffusion of ions on aquated membrane surfaces (and strong belief that this occurs through binding to a diffusing lipid). We performed classical molecular dynamics (MD) simulations of monovalent ions, Na, K, and Cl, near the surface of the zwitterionic palmitoyl-oleoyl-phosphatidylcholine (POPC) membrane. Realistic force-fields for lipids (Amber's Lipid17 and Lipid21) and water (TIP4P-Ew) are tested for the mass and charge densities and the electrostatic potential across the membrane. These calculations reveal that the chloride can bind to the choline moiety through an intervening water molecule by forming a CH⋯OH hydrogen bond, while cations bind to both the phosphatic and carbonyl oxygens of phosphatidylcholine moieties. Upon transitioning from the bulk to the interface, a cation sheds some of its hydration water, which are replaced by headgroup atoms. Notably, an interfacial cation can bind 1-4 headgroup atoms, which is a key to understanding its surface hopping mechanism. We find that cation binding to three headgroup atoms immobilizes it, while binding to four energizes it. Consequently, the lateral cation diffusion rate is only 15-25 times slower than in the bulk, and 4-5 times faster than lipid self-diffusion. K diffusion is notably more anomalous than Na, switching from sub- to super-diffusion after about 2 ns.
生物膜将活细胞与其环境隔离开来,同时允许分子在细胞内外进行选择性运输。例如,离子通道对钠和钾的通透性有助于神经传导。目前尚不清楚离子电流是直接源于本体中的阳离子,还是源于界面。关于离子在水合膜表面的横向扩散,仅有少量研究结果(并且人们坚信这是通过与扩散的脂质结合来实现的)。我们对两性离子的棕榈酰油酰磷脂酰胆碱(POPC)膜表面附近的单价离子钠、钾和氯进行了经典分子动力学(MD)模拟。针对脂质(Amber的Lipid17和Lipid21)和水(TIP4P-Ew)的实际力场,测试了膜上的质量和电荷密度以及静电势。这些计算表明,氯离子可以通过形成CH⋯OH氢键,经由一个中间水分子与胆碱部分结合,而阳离子则与磷脂酰胆碱部分的磷酸和羰基氧结合。从本体过渡到界面时,阳离子会脱去一些水合水,这些水合水被头部基团原子取代。值得注意的是,界面阳离子可以与1 - 4个头部基团原子结合,这是理解其表面跳跃机制的关键。我们发现,阳离子与三个头部基团原子结合会使其固定,而与四个头部基团原子结合则会使其获得能量。因此,阳离子的横向扩散速率仅比在本体中慢15 - 25倍,比脂质自扩散快4 - 5倍。钾的扩散比钠明显更不规则,在大约2纳秒后从亚扩散转变为超扩散。