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母亲数据库:一个用于共享非人类卵巢组织学图像的数据库。

MOTHER-DB: A Database for Sharing Nonhuman Ovarian Histology Images.

作者信息

Dietrich Suzanne W, Ma Wenli, Ding Yian, Watanabe Karen H, Zelinski Mary B, Sluka James P

出版信息

IEEE/ACM Trans Comput Biol Bioinform. 2024 Nov-Dec;21(6):2598-2603. doi: 10.1109/TCBB.2024.3426999. Epub 2024 Dec 10.

Abstract

The goal of the Multispecies Ovary Tissue Histology Electronic Repository (MOTHER) project is to establish a collection of nonhuman ovary histology images for multiple species as a resource for researchers and educators. An important component of sharing scientific data is the inclusion of the contextual metadata that describes the data. MOTHER extends the Ecological Metadata Language (EML) for documenting research data, leveraging its data provenance and usage license with the inclusion of metadata for ovary histology images. The design of the MOTHER metadata includes information on the donor animal, including reproductive cycle status, the slide and its preparation. MOTHER also extends the ezEML tool, called ezEML+MOTHER, for the specification of the metadata. The design of the MOTHER database (MOTHER-DB) captures the metadata about the histology images, providing a searchable resource for discovering relevant images. MOTHER also defines a curation process for the ingestion of a collection of images and its metadata, verifying the validity of the metadata before its inclusion in the MOTHER collection. A Web search provides the ability to identify relevant images based on various characteristics in the metadata itself, such as genus and species, using filters.

摘要

多物种卵巢组织组织学电子库(MOTHER)项目的目标是建立一个包含多个物种的非人类卵巢组织学图像的集合,作为研究人员和教育工作者的资源。共享科学数据的一个重要组成部分是包含描述数据的上下文元数据。MOTHER扩展了用于记录研究数据的生态元数据语言(EML),利用其数据来源和使用许可,并纳入了卵巢组织学图像的元数据。MOTHER元数据的设计包括关于供体动物的信息,包括生殖周期状态、载玻片及其制备。MOTHER还扩展了名为ezEML+MOTHER的ezEML工具,用于指定元数据。MOTHER数据库(MOTHER-DB)的设计捕获了关于组织学图像的元数据,提供了一个可搜索的资源来发现相关图像。MOTHER还定义了一个用于摄取图像及其元数据集合的管理过程,在将元数据纳入MOTHER集合之前验证其有效性。网络搜索提供了根据元数据本身的各种特征(如属和种)使用过滤器识别相关图像的能力。

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本文引用的文献

1
Overview of the Multispecies Ovary Tissue Histology Electronic Repository†.
Biol Reprod. 2024 Sep 14;111(3):512-515. doi: 10.1093/biolre/ioae101.
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