• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一个用于训练针对超大型图像的卷积神经网络的超MNIST分类基准。

An UltraMNIST classification benchmark to train CNNs for very large images.

作者信息

Gupta Deepak K, Bamba Udbhav, Thakur Abhishek, Gupta Akash, Agarwal Rohit, Sharan Suraj, Demir Ertugul, Agarwal Krishna, Prasad Dilip K

机构信息

Transmute AI Lab (Texmin Hub), Indian Institute of Technology, ISM Dhanbad, India.

Bio AI Lab, Department of Computer Science, UiT The Arctic University of Norway, Tromso, Norway.

出版信息

Sci Data. 2024 Jul 12;11(1):771. doi: 10.1038/s41597-024-03587-4.

DOI:10.1038/s41597-024-03587-4
PMID:38997285
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11245500/
Abstract

Current convolutional neural networks (CNNs) are not designed for large scientific images with rich multi-scale features, such as in satellite and microscopy domain. A new phase of development of CNNs especially designed for large images is awaited. However, application-independent high-quality and challenging datasets needed for such development are still missing. We present the 'UltraMNIST dataset' and associated benchmarks for this new research problem of 'training CNNs for large images'. The dataset is simple, representative of wide-ranging challenges in scientific data, and easily customizable for different levels of complexity, smallest and largest features, and sizes of images. Two variants of the problem are discussed: standard version that facilitates the development of novel CNN methods for effective use of the best available GPU resources and the budget-aware version to promote the development of methods that work under constrained GPU memory. Several baselines are presented and the effect of reduced resolution is studied. The presented benchmark dataset and baselines will hopefully trigger the development of new CNN methods for large scientific images.

摘要

当前的卷积神经网络(CNN)并非为具有丰富多尺度特征的大型科学图像而设计,比如卫星和显微镜领域的图像。人们期待着专门为大型图像设计的CNN发展的新阶段。然而,此类发展所需的与应用无关的高质量且具有挑战性的数据集仍然缺失。我们针对“为大型图像训练CNN”这一新研究问题,提出了“超MNIST数据集”及相关基准。该数据集很简单,代表了科学数据中广泛的挑战,并且可以轻松针对不同级别的复杂性、最小和最大特征以及图像大小进行定制。文中讨论了该问题的两种变体:标准版本有助于开发有效利用最佳可用GPU资源的新型CNN方法,以及预算感知版本以促进在有限GPU内存下工作的方法的开发。给出了几个基线,并研究了分辨率降低的影响。所呈现的基准数据集和基线有望引发针对大型科学图像的新CNN方法的开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/8d1abaabe042/41597_2024_3587_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/9078e60b79d5/41597_2024_3587_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/3b172ce47fa4/41597_2024_3587_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/3276ed090e7d/41597_2024_3587_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/010e73da3bc0/41597_2024_3587_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/d21ae1e3de31/41597_2024_3587_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/8d1abaabe042/41597_2024_3587_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/9078e60b79d5/41597_2024_3587_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/3b172ce47fa4/41597_2024_3587_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/3276ed090e7d/41597_2024_3587_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/010e73da3bc0/41597_2024_3587_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/d21ae1e3de31/41597_2024_3587_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/44fe/11245500/8d1abaabe042/41597_2024_3587_Fig6_HTML.jpg

相似文献

1
An UltraMNIST classification benchmark to train CNNs for very large images.一个用于训练针对超大型图像的卷积神经网络的超MNIST分类基准。
Sci Data. 2024 Jul 12;11(1):771. doi: 10.1038/s41597-024-03587-4.
2
An Ensemble of Fine-Tuned Convolutional Neural Networks for Medical Image Classification.用于医学图像分类的微调卷积神经网络集成
IEEE J Biomed Health Inform. 2017 Jan;21(1):31-40. doi: 10.1109/JBHI.2016.2635663. Epub 2016 Dec 5.
3
Study of the Application of Deep Convolutional Neural Networks (CNNs) in Processing Sensor Data and Biomedical Images.深度学习卷积神经网络(CNNs)在传感器数据和生物医学图像处理中的应用研究。
Sensors (Basel). 2019 Aug 17;19(16):3584. doi: 10.3390/s19163584.
4
Graph Attention Layer Evolves Semantic Segmentation for Road Pothole Detection: A Benchmark and Algorithms.图注意力层演进语义分割用于道路坑洼检测:基准和算法。
IEEE Trans Image Process. 2021;30:8144-8154. doi: 10.1109/TIP.2021.3112316. Epub 2021 Sep 28.
5
Transfer of Learning in the Convolutional Neural Networks on Classifying Geometric Shapes Based on Local or Global Invariants.基于局部或全局不变量的卷积神经网络在几何形状分类中的学习迁移
Front Comput Neurosci. 2021 Feb 19;15:637144. doi: 10.3389/fncom.2021.637144. eCollection 2021.
6
Brain tumor classification for MR images using transfer learning and fine-tuning.基于迁移学习和微调的磁共振图像脑肿瘤分类。
Comput Med Imaging Graph. 2019 Jul;75:34-46. doi: 10.1016/j.compmedimag.2019.05.001. Epub 2019 May 18.
7
Automatically Designing CNN Architectures Using the Genetic Algorithm for Image Classification.使用遗传算法自动设计用于图像分类的 CNN 架构。
IEEE Trans Cybern. 2020 Sep;50(9):3840-3854. doi: 10.1109/TCYB.2020.2983860. Epub 2020 Apr 21.
8
Classification of multi-feature fusion ultrasound images of breast tumor within category 4 using convolutional neural networks.使用卷积神经网络对 4 类乳腺肿瘤多特征融合超声图像进行分类。
Med Phys. 2024 Jun;51(6):4243-4257. doi: 10.1002/mp.16946. Epub 2024 Mar 4.
9
Skin Cancer Classification Using Convolutional Neural Networks: Systematic Review.使用卷积神经网络的皮肤癌分类:系统综述
J Med Internet Res. 2018 Oct 17;20(10):e11936. doi: 10.2196/11936.
10
Semi-supervised training of deep convolutional neural networks with heterogeneous data and few local annotations: An experiment on prostate histopathology image classification.基于异构数据和少量局部标注的深度卷积神经网络的半监督学习:前列腺组织病理学图像分类实验。
Med Image Anal. 2021 Oct;73:102165. doi: 10.1016/j.media.2021.102165. Epub 2021 Jul 14.

本文引用的文献

1
MedMNIST v2 - A large-scale lightweight benchmark for 2D and 3D biomedical image classification.MedMNIST v2 - 用于 2D 和 3D 生物医学图像分类的大规模轻量级基准。
Sci Data. 2023 Jan 19;10(1):41. doi: 10.1038/s41597-022-01721-8.
2
Chip-based multimodal super-resolution microscopy for histological investigations of cryopreserved tissue sections.基于芯片的多模态超分辨率显微镜用于冷冻保存组织切片的组织学研究。
Light Sci Appl. 2022 Feb 24;11(1):43. doi: 10.1038/s41377-022-00731-w.
3
A Survey of Convolutional Neural Networks: Analysis, Applications, and Prospects.
卷积神经网络综述:分析、应用与展望
IEEE Trans Neural Netw Learn Syst. 2022 Dec;33(12):6999-7019. doi: 10.1109/TNNLS.2021.3084827. Epub 2022 Nov 30.
4
Diagnostic accuracy of deep learning in medical imaging: a systematic review and meta-analysis.深度学习在医学成像中的诊断准确性:一项系统评价与荟萃分析。
NPJ Digit Med. 2021 Apr 7;4(1):65. doi: 10.1038/s41746-021-00438-z.
5
Review of deep learning: concepts, CNN architectures, challenges, applications, future directions.深度学习综述:概念、卷积神经网络架构、挑战、应用及未来方向。
J Big Data. 2021;8(1):53. doi: 10.1186/s40537-021-00444-8. Epub 2021 Mar 31.
6
Challenges facing quantitative large-scale optical super-resolution, and some simple solutions.定量大规模光学超分辨率面临的挑战及一些简单解决方案。
iScience. 2021 Feb 3;24(3):102134. doi: 10.1016/j.isci.2021.102134. eCollection 2021 Mar 19.
7
A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods.超分辨率单分子定位显微镜簇分析与量化方法综述
Patterns (N Y). 2020 Jun 12;1(3):100038. doi: 10.1016/j.patter.2020.100038.
8
High-resolution seismic tomography of Long Beach, CA using machine learning.利用机器学习对加利福尼亚州长滩进行高分辨率地震层析成像。
Sci Rep. 2019 Oct 18;9(1):14987. doi: 10.1038/s41598-019-50381-z.
9
Super-resolution microscopy demystified.超分辨率显微镜解析。
Nat Cell Biol. 2019 Jan;21(1):72-84. doi: 10.1038/s41556-018-0251-8. Epub 2019 Jan 2.
10
Microscopy, Meet Big Data.显微镜,遇见大数据。
Cell Syst. 2017 Mar 22;4(3):260-261. doi: 10.1016/j.cels.2017.03.009.