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基于支持向量机的代谢组学方法用于玉米中多类农药和兽药的非靶向筛查。

A Support Vector Machine-Assisted Metabolomics Approach for Non-Targeted Screening of Multi-Class Pesticides and Veterinary Drugs in Maize.

机构信息

Technology Centre of Dalian Customs, Dalian 116000, China.

出版信息

Molecules. 2024 Jun 26;29(13):3026. doi: 10.3390/molecules29133026.

DOI:10.3390/molecules29133026
PMID:38998975
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11243018/
Abstract

The contamination risks of plant-derived foods due to the co-existence of pesticides and veterinary drugs (P&VDs) have not been fully understood. With an increasing number of unexpected P&VDs illegally added to foods, it is essential to develop a non-targeted screening method for P&VDs for their comprehensive risk assessment. In this study, a modified support vector machine (SVM)-assisted metabolomics approach by screening eligible variables to represent marker compounds of 124 multi-class P&VDs in maize was developed based on the results of high-performance liquid chromatography-tandem mass spectrometry. Principal component analysis and orthogonal partial least squares discriminant analysis indicate the existence of variables with obvious inter-group differences, which were further investigated by S-plot plots, permutation tests, and variable importance in projection to obtain eligible variables. Meanwhile, SVM recursive feature elimination under the radial basis function was employed to obtain the weight-squared values of all the variables ranging from large to small for the screening of eligible variables as well. Pairwise -tests and fold changes of concentration were further employed to confirm these eligible variables to represent marker compounds. The results indicate that 120 out of 124 P&VDs can be identified by the SVM-assisted metabolomics method, while only 109 P&VDs can be found by the metabolomics method alone, implying that SVM can promote the screening accuracy of the metabolomics method. In addition, the method's practicability was validated by the real contaminated maize samples, which provide a bright application prospect in non-targeted screening of contaminants. The limits of detection for 120 P&VDs in maize samples were calculated to be 0.3~1.5 µg/kg.

摘要

植物源性食品中由于农药和兽药(P&VDs)共存而带来的污染风险尚未被充分了解。由于越来越多的意想不到的 P&VDs 被非法添加到食品中,因此开发一种针对 P&VDs 的非靶向筛选方法以进行全面的风险评估至关重要。在这项研究中,基于高效液相色谱-串联质谱的结果,通过筛选有代表性的变量来代表 124 种多类 P&VDs 在玉米中的标记化合物,开发了一种改进的支持向量机(SVM)辅助代谢组学方法。主成分分析和正交偏最小二乘判别分析表明存在具有明显组间差异的变量,进一步通过 S-plot 图、置换检验和变量投影重要性分析进行了研究,以获得有代表性的变量。同时,采用径向基函数下的 SVM 递归特征消除,获得所有变量从小到大的权重平方值,以筛选有代表性的变量。进一步采用两两检验和浓度倍数变化,确认这些有代表性的变量代表标记化合物。结果表明,124 种 P&VDs 中的 120 种可以通过 SVM 辅助代谢组学方法识别,而单独的代谢组学方法只能识别 109 种 P&VDs,这表明 SVM 可以提高代谢组学方法的筛选准确性。此外,通过实际污染的玉米样品验证了该方法的实用性,为非靶向筛选污染物提供了广阔的应用前景。120 种 P&VDs 在玉米样品中的检出限计算为 0.3~1.5µg/kg。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/968c923496e4/molecules-29-03026-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/c9d72115e2d9/molecules-29-03026-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/4f0c43686e10/molecules-29-03026-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/b5fcb14090b3/molecules-29-03026-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/2ae538f46f43/molecules-29-03026-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/968c923496e4/molecules-29-03026-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/c9d72115e2d9/molecules-29-03026-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/4f0c43686e10/molecules-29-03026-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/b5fcb14090b3/molecules-29-03026-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/2ae538f46f43/molecules-29-03026-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc29/11243018/968c923496e4/molecules-29-03026-g005.jpg

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