Biology Applied to Health Postgraduate Program. LIKA-Laboratory of Immunopatology Keizo Asami. Universidade Federal de Pernambuco, Av Prof Luis Freire, s/n. Cidade Universitaria, Recife-PE, Brazil.
Fundamental Chemistry Department, CCEN. Chemistry Postgraduate Program. Universidade Federal de Pernambuco. Av. Jornalista Aníbal Fernandes, s/n. Cidade Universitária, Recife-PE, Brazil.
PLoS One. 2019 May 29;14(5):e0217348. doi: 10.1371/journal.pone.0217348. eCollection 2019.
This is a report on how 1H NMR-based metabonomics was employed to discriminate osteopenia from osteoporosis in postmenopausal women, identifying the main metabolites associated to the separation between the groups. The Assays were performed using seventy-eight samples, being twenty-eight healthy volunteers, twenty-six osteopenia patients and twenty-four osteoporosis patients. PCA, LDA, PLS-DA and OPLS-DA formalisms were used. PCA discriminated the samples from healthy volunteers from diseased patient samples. Osteopenia-osteoporosis discrimination was only obtained using Analysis Discriminants formalisms, as LDA, PLS-DA and OPLS-DA. The metabonomics model using LDA formalism presented 88.0% accuracy, 88.5% specificity and 88.0% sensitivity. Cross-Validation, however, presented some problems as the accuracy of modeling decreased. LOOCV resulted in 78.0% accuracy. The OPLS-DA based model was better: R2Y and Q2 values equal to 0.871 (p<0.001) and 0.415 (p<0.001). LDA and OPLS-DA indicated the important spectral regions for discrimination, making possible to assign the metabolites involved in the skeletal system homeostasis, as follows: VLDL, LDL, leucine, isoleucine, allantoin, taurine and unsaturated lipids. These results indicate that 1H NMR-based metabonomics can be used as a diagnosis tool to discriminate osteoporosis from osteopenia using a single serum sample.
这是一篇关于如何利用基于 1H NMR 的代谢组学来区分绝经后妇女的骨质疏松症和骨质疏松症,确定与组间分离相关的主要代谢物的报告。该研究使用了 78 个样本,其中 28 个是健康志愿者,26 个是骨质疏松症患者,24 个是骨质疏松症患者。使用了 PCA、LDA、PLS-DA 和 OPLS-DA 等方法。PCA 区分了健康志愿者和患病患者的样本。只有使用分析判别法(如 LDA、PLS-DA 和 OPLS-DA)才能区分骨质疏松症和骨质疏松症。基于 LDA 形式主义的代谢组学模型具有 88.0%的准确率、88.5%的特异性和 88.0%的敏感性。然而,交叉验证存在一些问题,因为建模的准确性降低了。LOOCV 的准确率为 78.0%。基于 OPLS-DA 的模型更好:R2Y 和 Q2 值分别为 0.871(p<0.001)和 0.415(p<0.001)。LDA 和 OPLS-DA 指示了用于区分的重要光谱区域,使得能够分配涉及骨骼系统稳态的代谢物,如下所示:VLDL、LDL、亮氨酸、异亮氨酸、尿囊素、牛磺酸和不饱和脂质。这些结果表明,基于 1H NMR 的代谢组学可以作为一种诊断工具,使用单个血清样本来区分骨质疏松症和骨质疏松症。