CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411 008, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India.
CSIR-National Chemical Laboratory, Dr. Homi Bhabha Road, Pune 411 008, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India.
Biophys Chem. 2024 Oct;313:107289. doi: 10.1016/j.bpc.2024.107289. Epub 2024 Jul 3.
G protein-coupled receptors (GPCRs) are lipid-regulated transmembrane proteins that play a central role in cell signaling and pharmacology. Although the role of membrane lipids in GPCR function is well established, the underlying GPCR-lipid interactions have not been thermodynamically characterized due to the complexity of these interactions. In this work, we estimate the energetics and dynamics of lipid association from coarse-grain simulations of the serotonin receptor embedded in a complex membrane. We show that lipids bind to the receptor with varying energetics of 1-4 kT, and timescales of 1-10 μs. The most favorable energetics and longest residence times are observed for cholesterol, glycosphingolipid GM1, phosphatidylethanolamine (PE) and phosphatidylserine (PS) lipids. Multi-exponential fitting of the contact probability suggests distinct dynamic regimes, corresponding to ps, ns and μs timescales, that we correlate with the annular, intermediate and non-annular lipid sites. The timescales of lipid binding correspond to high barrier heights, despite their relatively weaker energetics. Our results highlight that GPCR-lipid interactions are driven by both thermodynamic interactions and the dynamical features of lipid binding.
G 蛋白偶联受体(GPCRs)是脂质调节的跨膜蛋白,在细胞信号转导和药理学中发挥核心作用。尽管膜脂在 GPCR 功能中的作用已得到充分证实,但由于这些相互作用的复杂性,尚未对 GPCR-脂相互作用进行热力学表征。在这项工作中,我们通过嵌入复杂膜中的血清素受体的粗粒度模拟来估计脂质缔合的热力学和动力学。我们表明,脂质与受体的结合具有不同的能量学 1-4 kT 和 1-10 μs 的时间尺度。胆固醇、糖脂 GM1、磷脂酰乙醇胺 (PE) 和磷脂酰丝氨酸 (PS) 脂质具有最有利的能量学和最长的停留时间。接触概率的多指数拟合表明存在不同的动态状态,分别对应于 ps、ns 和 μs 时间尺度,我们将其与环形、中间和非环形脂质位置相关联。尽管脂质结合的能量学相对较弱,但结合的时间尺度仍然很高。我们的结果强调了 GPCR-脂相互作用是由热力学相互作用和脂结合的动力学特征共同驱动的。