长读长测序揭示了从日本福井县一个海滩分离出的MAO6菌株中有两条染色体和一个质粒。
Long-read sequencing reveals two chromosomes and one plasmid in sp. strain MAO6 isolated from a Marine Beach in Fukui, Japan.
作者信息
Tsukamoto Mao, Machii Yuka, Kataoka Takafumi, Kondo Ryuji
机构信息
Department of Marine Science and Technology, Fukui Prefectural University , Obama, Fukui, Japan.
出版信息
Microbiol Resour Announc. 2024 Aug 13;13(8):e0036924. doi: 10.1128/mra.00369-24. Epub 2024 Jul 15.
Abstract
A marine bacterium sp. strain MAO6 was isolated from a marine beach in Fukui, Japan. Its complete genome comprises two circular chromosomes (3,418,677 bp and 1,629,627 bp) and one circular plasmid (299,686 bp).
摘要
从日本福井的一个海滩分离出一株海洋细菌sp. 菌株MAO6。其完整基因组由两条环状染色体（3,418,677 bp和1,629,627 bp）和一个环状质粒（299,686 bp）组成。
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本文引用的文献
1
Assembly of long, error-prone reads using repeat graphs.使用重复图组装长的、易错的读取。
Nat Biotechnol. 2019 May;37(5):540-546. doi: 10.1038/s41587-019-0072-8. Epub 2019 Apr 1.
2
DFAST and DAGA: web-based integrated genome annotation tools and resources.DFAST和DAGA：基于网络的综合基因组注释工具与资源。
Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14.
3
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes.为了在原核生物的种系划分中实现平均核苷酸同一性和 16S rRNA 基因序列相似性之间的分类学一致性。
Int J Syst Evol Microbiol. 2014 Feb;64(Pt 2):346-351. doi: 10.1099/ijs.0.059774-0.
4
Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis.对16S rRNA基因PCR引物对的实证测试揭示了计算机分析未显示的目标特异性和功效差异。
Appl Environ Microbiol. 2009 May;75(9):2677-83. doi: 10.1128/AEM.02166-08. Epub 2009 Feb 27.
5
A greedy algorithm for aligning DNA sequences.一种用于比对DNA序列的贪婪算法。
J Comput Biol. 2000 Feb-Apr;7(1-2):203-14. doi: 10.1089/10665270050081478.
6
DNA-DNA reassociation among a bloom-forming cyanobacterial genus, Microcystis.
Int J Syst Evol Microbiol. 2000 Mar;50 Pt 2:767-770. doi: 10.1099/00207713-50-2-767.
7
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA.通过对聚合酶链反应扩增的编码16S rRNA的基因进行变性梯度凝胶电泳分析来剖析复杂微生物群落。
Appl Environ Microbiol. 1993 Mar;59(3):695-700. doi: 10.1128/aem.59.3.695-700.1993.
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