Department of Chemistry, Rice University, Houston, TX, USA.
Department of Bioengineering, Rice University, Houston, TX, USA.
Nat Chem. 2024 Oct;16(10):1698-1704. doi: 10.1038/s41557-024-01573-2. Epub 2024 Jul 15.
The most abundant natural collagens form heterotrimeric triple helices. Synthetic mimics of collagen heterotrimers have been found to fold slowly, even compared to the already slow rates of homotrimeric helices. These prolonged folding rates are not understood. Here we compare the stabilities, specificities and folding rates of three heterotrimeric collagen mimics designed through a computationally assisted approach. The crystal structure of one ABC-type heterotrimer verified a well-controlled composition and register and elucidated the geometry of pairwise cation-π and axial and lateral salt bridges in the assembly. This collagen heterotrimer folds much faster (hours versus days) than comparable, well-designed systems. Circular dichroism and NMR data suggest the folding is frustrated by unproductive, competing heterotrimer species and these species must unwind before refolding into the thermodynamically favoured assembly. The heterotrimeric collagen folding rate is inhibited by the introduction of preformed competing triple-helical assemblies, which suggests that slow heterotrimer folding kinetics are dominated by the frustration of the energy landscape caused by competing triple helices.
最丰富的天然胶原蛋白形成异三聚体三螺旋。已经发现胶原蛋白异三聚体的合成模拟物折叠缓慢,甚至与已经较慢的同三聚体螺旋相比也是如此。这些延长的折叠速率尚不清楚。在这里,我们通过计算辅助方法比较了三种设计的异三聚体胶原蛋白模拟物的稳定性、特异性和折叠速率。一种 ABC 型异三聚体的晶体结构验证了良好控制的组成和排列,并阐明了组装中成对的阳离子-π 和轴向和侧向盐桥的几何形状。这种胶原蛋白异三聚体的折叠速度(数小时而不是数天)比可比的、精心设计的系统快得多。圆二色性和 NMR 数据表明,折叠受到非生产性、竞争的异三聚体物种的阻碍,这些物种必须解旋才能重新折叠成热力学有利的组装体。引入预先形成的竞争三螺旋组装体抑制了异三聚体胶原蛋白的折叠速率,这表明缓慢的异三聚体折叠动力学主要由竞争三螺旋引起的能量景观的阻碍所主导。