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增生性瘢痕乳酰组学和蛋白质组学的综合分析,以鉴定与疾病发展相关的途径或蛋白质。

Integrative Analysis of Lactylome and Proteome of Hypertrophic Scar To Identify Pathways or Proteins Associated with Disease Development.

机构信息

Department of Plastic and Cosmetic Surgery, Women's Hospital of Nanjing Medical University (Nanjing Women and Children's Healthcare Hospital), 123rd Tianfei Street, Mochou Road, Nanjing 210004, China.

Nanjing Maternal and Child Health Institute, Women's Hospital of Nanjing Medical University (Nanjing Women and Children's Healthcare Hospital), 123rd Tianfei Street, Mochou Road, Nanjing 210004, China.

出版信息

J Proteome Res. 2024 Aug 2;23(8):3367-3382. doi: 10.1021/acs.jproteome.3c00901. Epub 2024 Jul 16.

DOI:10.1021/acs.jproteome.3c00901
PMID:39012622
Abstract

Lactylation (Kla), a recently discovered post-translational modification derived from lactate, plays crucial roles in various cellular processes. However, the specific influence of lactylation on the biological processes underlying hypertrophic scar formation remains unclear. In this study, we present a comprehensive profiling of the lactylome and proteome in both hypertrophic scars and adjacent normal skin tissues. A total of 1023 Kla sites originating from 338 nonhistone proteins were identified based on lactylome analysis. Proteome analysis in hypertrophic scar and adjacent skin samples revealed the identification of 2008 proteins. It is worth noting that Kla exhibits a preference for genes associated with ribosome function as well as glycolysis/gluconeogenesis in both normal skin and hypertrophic scar tissues. Furthermore, the functional enrichment analysis demonstrated that differentially lactyled proteins are primarily involved in proteoglycans, HIF-1, and AMPK signaling pathways. The combined analysis of the lactylome and proteome data highlighted a significant upregulation of 14 lactylation sites in hypertrophic scar tissues. Overall, our investigation unveiled the significant involvement of protein lactylation in the regulation of ribosome function as well as glycolysis/gluconeogenesis, potentially contributing to the formation of hypertrophic scars.

摘要

乳酰化(Kla)是一种最近发现的来源于乳酸的翻译后修饰,在各种细胞过程中发挥着关键作用。然而,乳酰化对肥厚性瘢痕形成的生物学过程的具体影响尚不清楚。在这项研究中,我们对肥厚性瘢痕和相邻正常皮肤组织中的乳酰组和蛋白质组进行了全面分析。基于乳酰组分析,共鉴定出 338 种非组蛋白来源的 1023 个 Kla 位点。在肥厚性瘢痕和相邻皮肤样本中的蛋白质组分析中,共鉴定出 2008 种蛋白质。值得注意的是,Kla 表现出对与核糖体功能以及正常皮肤和肥厚性瘢痕组织中糖酵解/糖异生相关的基因的偏好。此外,功能富集分析表明,差异乳酰化蛋白主要参与蛋白聚糖、HIF-1 和 AMPK 信号通路。乳酰组和蛋白质组数据的综合分析突出了肥厚性瘢痕组织中 14 个乳酰化位点的显著上调。总的来说,我们的研究揭示了蛋白质乳酰化在核糖体功能和糖酵解/糖异生调节中的显著作用,可能有助于肥厚性瘢痕的形成。

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