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对一种表观突变体的表观遗传学见解:从果实成熟到应激反应

Epigenetic insights into an epimutant : from fruit ripening to stress responses.

作者信息

Zhu Huihui, Yang Jian Li, Chen Weiwei

机构信息

College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China.

Key Laboratory of Vegetable Biology, College of Landscape and Horticulture, Yunnan Agricultural University, Kunming, China.

出版信息

Front Plant Sci. 2024 Jul 2;15:1440120. doi: 10.3389/fpls.2024.1440120. eCollection 2024.

DOI:10.3389/fpls.2024.1440120
PMID:39015288
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11250591/
Abstract

The epigenetic machinery has received extensive attention due to its involvement in plant growth, development, and adaptation to environmental changes. Recent studies often highlight the epigenetic regulatory network by discussing various epigenetic mutants across various plant species. However, a systemic understanding of essential epigenetic regulatory mechanisms remains limited due to a lack of representative mutants involved in multiple biological processes. (), a spontaneous epimutant isolated from a commercial population, was initially characterized for its role in fruit ripening regulation. fruits exhibit an immature phenotype with yellow skin, attributed to hypermethylation of the () promoter, resulting in the repression of gene expression. In addition to DNA methylation, this process also involves histone modification and microRNA, integrating multiple epigenetic regulatory factors. Interestingly, knockout mutants of display phenotypical distinctions from in fruit ripening, indicating complex genetic and epigenetic control over the non-ripening phenotype in fruits. Accumulating evidence suggests that epimutation is pleiotropic, participating in various biological processes such as Cd stress, Fe deficiency, vivipary, and cell death. Therefore, the epimutant serve as an excellent model for unveiling how epigenetic mechanisms are involved in diverse biological processes. This review paper focuses on recent research advances regarding the epimutant, delving into its complex genetic and epigenetic regulatory mechanisms, with the aim of enhancing our understanding and facilitating the development of high-quality, high-yield crops through epigenetic modification.

摘要

表观遗传机制因其参与植物生长、发育以及对环境变化的适应而受到广泛关注。近期研究常常通过讨论各种植物物种中的各种表观遗传突变体来突出表观遗传调控网络。然而,由于缺乏涉及多个生物学过程的代表性突变体,对基本表观遗传调控机制的系统理解仍然有限。()是从商业群体中分离出的一个自发表观突变体,最初对其在果实成熟调控中的作用进行了表征。()果实表现出未成熟的表型,果皮呈黄色,这归因于()启动子的高甲基化,导致基因表达受到抑制。除了DNA甲基化外,这个过程还涉及组蛋白修饰和微小RNA,整合了多种表观遗传调控因子。有趣的是,()的敲除突变体在果实成熟方面表现出与()不同的表型,表明对()果实非成熟表型存在复杂的遗传和表观遗传控制。越来越多的证据表明,()表观突变具有多效性,参与了各种生物学过程,如镉胁迫、缺铁、胎萌和细胞死亡。因此,()表观突变体是揭示表观遗传机制如何参与多种生物学过程的优秀模型。这篇综述文章重点关注了关于()表观突变体的最新研究进展,深入探讨了其复杂的遗传和表观遗传调控机制,旨在增进我们的理解,并通过表观遗传修饰促进高品质、高产作物的培育。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e1/11250591/086ef311198c/fpls-15-1440120-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e1/11250591/086ef311198c/fpls-15-1440120-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/28e1/11250591/086ef311198c/fpls-15-1440120-g001.jpg

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本文引用的文献

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Epigenetic modification of a pectin methylesterase gene activates apoplastic iron reutilization in tomato roots.果胶甲酯酶基因的表观遗传修饰激活番茄根中的质外体铁再利用。
Plant Physiol. 2024 Jun 28;195(3):2339-2353. doi: 10.1093/plphys/kiae167.
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Increasing flavonoid contents of tomato fruits through disruption of the SlSPL-CNR, a suppressor of SlMYB12 transcription activity.通过破坏SlSPL-CNR(SlMYB12转录活性的抑制因子)来提高番茄果实中的类黄酮含量。
Plant Biotechnol J. 2024 Feb;22(2):290-292. doi: 10.1111/pbi.14214. Epub 2023 Oct 30.
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Proteomic Changes in Response to Mutation during Tomato Fruit Ripening.
番茄果实成熟过程中响应突变的蛋白质组变化
Plants (Basel). 2022 Dec 17;11(24):3570. doi: 10.3390/plants11243570.
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The miR157-SPL-CNR module acts upstream of bHLH101 to negatively regulate iron deficiency responses in tomato.miR157-SPL-CNR模块在bHLH101上游发挥作用,对番茄缺铁反应进行负调控。
J Integr Plant Biol. 2022 May;64(5):1059-1075. doi: 10.1111/jipb.13251. Epub 2022 Apr 22.
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DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development.无 DNA 甲基化的拟南芥揭示了 DNA 甲基化在调控基因表达和发育中的关键作用。
Nat Commun. 2022 Mar 14;13(1):1335. doi: 10.1038/s41467-022-28940-2.
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Comparative Physiological and Transcriptomic Analyses Reveal Altered Fe-Deficiency Responses in Tomato Epimutant .比较生理学和转录组学分析揭示番茄表观突变体中铁缺乏反应的改变
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A DNA Methylation Reader-Chaperone Regulator-Transcription Factor Complex Activates Expression during Salinity Stress.DNA 甲基化读码器-伴侣蛋白调节剂-转录因子复合物在盐胁迫下激活表达。
Plant Cell. 2020 Nov;32(11):3535-3558. doi: 10.1105/tpc.20.00301. Epub 2020 Sep 15.
8
and Ripening Modulate Vivipary during Tomato Fruit Development.并且在番茄果实发育过程中,成熟和软化调节胎生现象。
Plant Physiol. 2020 Aug;183(4):1883-1897. doi: 10.1104/pp.20.00499. Epub 2020 Jun 5.
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BEL1-LIKE HOMEODOMAIN4 regulates chlorophyll accumulation, chloroplast development, and cell wall metabolism in tomato fruit.类BELL同源异型结构域4调控番茄果实中的叶绿素积累、叶绿体发育和细胞壁代谢。
J Exp Bot. 2020 Sep 19;71(18):5549-5561. doi: 10.1093/jxb/eraa272.
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The rin, nor and Cnr spontaneous mutations inhibit tomato fruit ripening in additive and epistatic manners. rin、nor 和 Cnr 自发突变以累加和上位性方式抑制番茄果实成熟。
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