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欧斑鸠(林奈,1758年)的基因组序列。

The genome sequence of the European turtle dove, Linnaeus 1758.

作者信息

Dunn Jenny C, Hamer Keith C, Morris Antony J, Grice Philip V, Smith Michelle, Corton Craig, Oliver Karen, Skelton Jason, Betteridge Emma, Dolucan Jale, Quail Michael A, McCarthy Shane A, Uliano-Silva Marcela, Howe Kerstin, Torrance James, Chow William, Pelan Sarah, Sims Ying, Challis Richard, Threlfall Jonathan, Mead Daniel, Blaxter Mark

机构信息

University of Lincoln, Lincoln, LN6 7TS, UK.

School of Biology, University of Leeds, Leeds, LS2 9JT, UK.

出版信息

Wellcome Open Res. 2021 Jul 27;6:191. doi: 10.12688/wellcomeopenres.17060.1. eCollection 2021.

DOI:10.12688/wellcomeopenres.17060.1
PMID:39021440
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11252641/
Abstract

We present a genome assembly from an individual female (the European turtle dove; Chordata; Aves; Columbidae). The genome sequence is 1.18 gigabases in span. The majority of the assembly is scaffolded into 35 chromosomal pseudomolecules, with the W and Z sex chromosomes assembled.

摘要

我们展示了一只雌性个体(欧斑鸠;脊索动物门;鸟纲;鸠鸽科)的基因组组装结果。基因组序列跨度为11.8亿碱基对。大部分组装序列被构建成35条染色体假分子,其中包括W和Z性染色体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/777aa7cb4ae2/wellcomeopenres-6-18842-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/28bfc1ff1d43/wellcomeopenres-6-18842-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/da54ebcc8e46/wellcomeopenres-6-18842-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/f71c75365270/wellcomeopenres-6-18842-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/777aa7cb4ae2/wellcomeopenres-6-18842-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/28bfc1ff1d43/wellcomeopenres-6-18842-g0000.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/da54ebcc8e46/wellcomeopenres-6-18842-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/f71c75365270/wellcomeopenres-6-18842-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bcfd/11252641/777aa7cb4ae2/wellcomeopenres-6-18842-g0003.jpg

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本文引用的文献

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Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28.
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Significantly improving the quality of genome assemblies through curation.通过编辑显著提高基因组组装的质量。
Gigascience. 2021 Jan 9;10(1). doi: 10.1093/gigascience/giaa153.
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BlobToolKit - Interactive Quality Assessment of Genome Assemblies.BlobToolKit - 基因组组装的交互式质量评估。
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Novel ADA2 mutation presenting with neutropenia, lymphopenia and bone marrow failure in patients with deficiency in adenosine deaminase 2 (DADA2).在腺苷脱氨酶2缺乏症(DADA2)患者中出现中性粒细胞减少、淋巴细胞减少和骨髓衰竭的新型ADA2突变。
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The decline of the Turtle Dove: Dietary associations with body condition and competition with other columbids analysed using high-throughput sequencing.斑鸠数量的减少:通过高通量测序分析饮食与身体状况的关联以及与其他鸽形目鸟类的竞争关系
Mol Ecol. 2018 Jun 21. doi: 10.1111/mec.14766.
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Phased diploid genome assembly with single-molecule real-time sequencing.基于单分子实时测序的阶段性二倍体基因组组装
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