Laboratoire d'Innovation Thérapeutique, UMR7200 CNRS - Université de Strasbourg, Faculté de Pharmacie, 74 route du Rhin, Illkirch-Graffenstaden, 67400, France.
Inovarion, 251 rue St Jacques, Paris, 75005, France.
ChemMedChem. 2024 Oct 16;19(20):e202400381. doi: 10.1002/cmdc.202400381. Epub 2024 Aug 5.
A chemical library is a key element in the early stages of pharmaceutical research. Its design encompasses various factors, such as diversity, size, ease of synthesis, aimed at increasing the likelihood of success in drug discovery. This article explores the collaborative efforts of computational and synthetic chemists in tailoring chemical libraries for cost-effective and resource-efficient use, particularly in the context of academic research projects. It proposes chemoinformatics methodologies that address two pivotal questions: first, crafting a diverse panel of under 1000 compounds from an existing pool through synthetic efforts, leveraging the expertise of organic chemists; and second, expanding pharmacophoric diversity within this panel by creating a highly accessible virtual chemical library. Chemoinformatics tools were developed to analyse initial panel of about 10,000 compounds into two tailored libraries: eIMS and vIMS. The eIMS Library comprises 578 diverse in-stock compounds ready for screening. Its virtual counterpart, vIMS, features novel compounds guided by chemists, ensuring synthetic accessibility. vIMS offers a broader array of binding motifs and improved drug-like characteristics achieved through the addition of diverse functional groups to eIMS scaffolds followed by filtering of reactive or unusual structures. The uniqueness of vIMS is emphasized through a comparison with commercial suppliers' virtual chemical space.
化学文库是药物研究早期阶段的关键要素。其设计涵盖了多样性、大小、易于合成等各种因素,旨在提高药物发现的成功率。本文探讨了计算化学家和合成化学家在为成本效益和资源效率而定制化学文库方面的协作努力,特别是在学术研究项目的背景下。它提出了化学生信学方法,以解决两个关键问题:首先,通过利用有机化学家的专业知识,从现有库中通过合成努力构建一个包含不到 1000 种化合物的多样化面板;其次,通过创建一个高度可访问的虚拟化学文库来扩展该面板中的药效团多样性。化学生信学工具被开发用于将初始约 10000 种化合物的面板分析为两个定制的文库:eIMS 和 vIMS。eIMS 文库包含 578 种现成的多样化库存化合物,可用于筛选。其虚拟对应物 vIMS 则包含由化学家指导的新型化合物,确保了合成的可及性。vIMS 通过向 eIMS 支架添加多样化的功能基团并对反应性或不寻常的结构进行过滤,提供了更广泛的结合基序和改善的类药性特征。通过与商业供应商的虚拟化学空间进行比较,突出了 vIMS 的独特性。