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用于电子冷冻断层成像的 Bunyavirus 感染细胞的制备。

Preparation of Bunyavirus-Infected Cells for Electron Cryo-Tomography.

机构信息

Centre for Structural Systems Biology (CSSB), Hamburg, Germany.

Leibniz Institute of Virology (LIV), Hamburg, Germany.

出版信息

Methods Mol Biol. 2024;2824:221-239. doi: 10.1007/978-1-0716-3926-9_15.

DOI:10.1007/978-1-0716-3926-9_15
PMID:39039416
Abstract

Cellular electron cryo-tomography (cryoET) produces high-resolution three-dimensional images of subcellular structures in a near-native frozen-hydrated state. These three-dimensional images are obtained by recording a series of two-dimensional tilt images on a transmission electron cryo-microscope that are subsequently back-projected to form a tomogram. Key to a successful experiment is however a high-quality sample. This chapter outlines a basic workflow for the preparation of cellular cryoET samples. It covers the preparation of infected cells on electron cryo-microscopy grids and the vitrification by plunge-freezing and clipping of grids into AutoGrid rims. It also provides a general overview of the workflow for thinning the vitrified cells by focused ion beam (FIB) milling. Although this book is dedicated to Rift Valley fever virus research, the present protocol may also be applied to any other research subject where high-resolution structural insight into intracellular processes is desired.

摘要

细胞电子冷冻断层成像(cryoET)以近天然的冷冻水合状态产生亚细胞结构的高分辨率三维图像。这些三维图像是通过在透射电子冷冻显微镜上记录一系列二维倾斜图像获得的,然后对这些图像进行反向投影以形成断层扫描图像。然而,成功实验的关键是高质量的样品。本章概述了细胞 cryoET 样品制备的基本工作流程。它涵盖了在电子冷冻显微镜网格上制备感染细胞以及通过无浸泡冷冻和将网格夹入 AutoGrid 边缘进行玻璃化的过程。它还提供了通过聚焦离子束(FIB)铣削对玻璃化细胞进行减薄的一般工作流程概述。尽管本书专门介绍裂谷热病毒研究,但本方案也可应用于任何其他需要对细胞内过程进行高分辨率结构洞察的研究课题。

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A focused ion beam milling and lift-out approach for site-specific preparation of frozen-hydrated lamellas from multicellular organisms.一种用于从多细胞生物体中进行特定部位冷冻水合薄片制备的聚焦离子束铣削和剥离方法。
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本文引用的文献

1
The reduction of FIB damage on cryo-lamella by lowering energy of ion beam revealed by a quantitative analysis.通过定量分析揭示了降低离子束能量可减少冷冻薄片上的FIB损伤。
Structure. 2023 Oct 5;31(10):1275-1281.e4. doi: 10.1016/j.str.2023.07.002. Epub 2023 Jul 31.
2
Cryo-electron tomography on focused ion beam lamellae transforms structural cell biology.聚焦离子束切片的冷冻电子断层成像改变了结构细胞生物学。
Nat Methods. 2023 Apr;20(4):499-511. doi: 10.1038/s41592-023-01783-5. Epub 2023 Mar 13.
3
Plasma FIB milling for the determination of structures in situ.
等离子体 FIB 铣削用于原位结构的测定。
Nat Commun. 2023 Feb 6;14(1):629. doi: 10.1038/s41467-023-36372-9.
4
The mechanism of genome replication and transcription in bunyaviruses.布尼亚病毒基因组复制和转录的机制。
PLoS Pathog. 2023 Jan 12;19(1):e1011060. doi: 10.1371/journal.ppat.1011060. eCollection 2023 Jan.
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Novel machine learning approaches revolutionize protein knowledge.新型机器学习方法彻底改变了蛋白质知识。
Trends Biochem Sci. 2023 Apr;48(4):345-359. doi: 10.1016/j.tibs.2022.11.001. Epub 2022 Dec 9.
6
Structural investigation of eukaryotic cells: From the periphery to the interior by cryo-electron tomography.真核细胞结构研究:通过冷冻电镜断层扫描从外周到内部。
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7
Protocol for live-cell fluorescence-guided cryoFIB-milling and electron cryo-tomography of virus-infected cells.活细胞荧光引导的 cryoFIB 铣切和电子冷冻断层成像病毒感染细胞的方案。
STAR Protoc. 2022 Dec 16;3(4):101696. doi: 10.1016/j.xpro.2022.101696. Epub 2022 Sep 22.
8
Cryo-correlative light and electron microscopy workflow for cryo-focused ion beam milled adherent cells.用于冷冻聚焦离子束铣削贴壁细胞的冷冻相关光和电子显微镜工作流程。
Methods Cell Biol. 2021;162:273-302. doi: 10.1016/bs.mcb.2020.12.009. Epub 2021 Feb 17.
9
The promise and the challenges of cryo-electron tomography.冷冻电镜断层成像的前景与挑战。
FEBS Lett. 2020 Oct;594(20):3243-3261. doi: 10.1002/1873-3468.13948. Epub 2020 Oct 23.
10
Preparing samples from whole cells using focused-ion-beam milling for cryo-electron tomography.使用聚焦离子束铣削法从全细胞中制备样品,用于冷冻电子断层扫描。
Nat Protoc. 2020 Jun;15(6):2041-2070. doi: 10.1038/s41596-020-0320-x. Epub 2020 May 13.