Akram Areeba, Sakhawat Azra, Ghani Muhammad Usman, Khan Muhammad Umer, Rehman Raima, Ali Qurban, Jin-Liang Peng, Ali Daoud
Precision Genomics Research Lab, Centre for Applied Molecular Biology, University of the Punjab, Lahore, Pakistan.
Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan.
AMB Express. 2024 Jul 23;14(1):84. doi: 10.1186/s13568-024-01742-z.
Cystic Fibrosis Transmembrane Regulator (CFTR) is a significant protein that is responsible for the movement of ions across cell membranes. The cystic fibrosis (CF) occur due to the mutations in the CFTR gene as it produces the dysfunctional CFTR protein. The sequence of CFTR protein as a target structure was retrieved from UniProt and PDB database. The ligands selection was performed through virtual screening and top 3 ligands choose out of 65 ligands silibinins, curcumin, demethoxycurcumin were selected with a reference drug Trikafta (R*). According to docking, ADMET analyses, the natural ligands (Silibinins and Curcumin) displayed best binding energy, pharmacokinetic and free toxicity than other natural compounds and reference drug (R*). An MD simulation for 200 ns was also established to ensure that natural ligands (Silibinins and Curcumin) attached to the target protein favorably and dynamically, and that protein-ligand complex stability was maintained. It is concluded that silibinins and curcumins have a better capacity to decrease the effect of mutant CFTR protein through improved trafficking and the restoration of original function. In conclusion, in silico studies demonstrate the potential of silibinins and curcumin as therapeutic agents for cystic fibrosis, particularly for the D614G mutated protein. Their ability to increase CFTR function while reducing cellular stress and inflammation, together with their favorable safety profile and accessibility could make them valuable additions to cystic fibrosis treatment options. Further experimental and clinical validation will be required to fully realize their potential and include them into effective therapy regimens.
囊性纤维化跨膜传导调节因子(CFTR)是一种重要的蛋白质,负责离子跨细胞膜的转运。囊性纤维化(CF)是由于CFTR基因突变导致产生功能失调的CFTR蛋白而引起的。从UniProt和PDB数据库中检索了CFTR蛋白作为靶标结构的序列。通过虚拟筛选进行配体选择,从65种配体中选出了排名前3的配体水飞蓟宾、姜黄素、去甲氧基姜黄素,并选择了参考药物Trikafta(R*)。根据对接、ADMET分析,天然配体(水飞蓟宾和姜黄素)比其他天然化合物和参考药物(R*)表现出更好的结合能、药代动力学和低毒性。还进行了200纳秒的分子动力学模拟,以确保天然配体(水飞蓟宾和姜黄素)能够有利且动态地附着在靶蛋白上,并维持蛋白质-配体复合物的稳定性。结论是,水飞蓟宾和姜黄素具有更好的能力,可通过改善转运和恢复原始功能来降低突变CFTR蛋白的影响。总之,计算机模拟研究证明了水飞蓟宾和姜黄素作为囊性纤维化治疗药物的潜力,特别是对于D614G突变蛋白。它们在增加CFTR功能的同时降低细胞应激和炎症的能力,以及良好的安全性和可及性,可能使它们成为囊性纤维化治疗选择中有价值的补充。要充分实现它们的潜力并将其纳入有效的治疗方案,还需要进一步的实验和临床验证。