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高通量测序技术解析南海四种珊瑚中真菌的生物多样性、分布及功能差异

Biodiversity, Distribution and Functional Differences of Fungi in Four Species of Corals from the South China Sea, Elucidated by High-Throughput Sequencing Technology.

作者信息

Dong Wenyu, Chen Jiatao, Liao Xinyu, Chen Xinye, Huang Liyu, Huang Jiayu, Huang Riming, Zhong Saiyi, Zhang Xiaoyong

机构信息

University Joint Laboratory of Guangdong Province, Hong Kong and Macao Region on Marine Bioresource Conservation and Exploitation, College of Marine Sciences, South China Agricultural University, Guangzhou 510642, China.

Guangdong Provincial Key Laboratory of Aquatic Product Processing and Safety, College of Food Science and Technology, Guangdong Ocean University, Zhanjiang 524088, China.

出版信息

J Fungi (Basel). 2024 Jun 27;10(7):452. doi: 10.3390/jof10070452.

Abstract

Recent studies have predominantly spotlighted bacterial diversity within coral microbiomes, leaving coral-associated fungi in the shadows of scientific inquiry. This study endeavors to fill this knowledge gap by delving into the biodiversity, distribution and functional differences of fungi associated with soft corals and , gorgonian coral and stony coral from the South China Sea. Leveraging high-throughput sequencing of fungal internal transcribed spacer-1 (ITS1) region of the rRNA gene, a total of 431 fungal amplicon sequence variants (ASVs) were identified in this study, which indicated that a large number of fungal communities were harbored in the South China Sea corals. Noteworthy among our findings is that 10 fungal genera are reported for the first time in corals, with , , , , , , and belonging to the Ascomycota, and , and to the Basidiomycota. Moreover, significant differences ( < 0.05) of fungal communities were observed among the various coral species. In particular, the gorgonian coral emerged as a veritable haven for fungal diversity, boasting 307 unique ASVs. Contrastingly, soft corals and exhibited modest fungal diversity, with 36 and 21 unique ASVs, respectively, while the stony coral hosted a comparatively sparse fungal community, with merely 10 unique ASVs in total. These findings not only provide basic data on fungal diversity and function in the South China Sea corals, but also underscore the imperative of nuanced conservation and management strategies for coral reef ecosystems worldwide.

摘要

最近的研究主要聚焦于珊瑚微生物群中的细菌多样性,使与珊瑚相关的真菌处于科学探究的阴影之中。本研究致力于通过深入研究来自中国南海的软珊瑚、柳珊瑚和石珊瑚相关真菌的生物多样性、分布及功能差异,来填补这一知识空白。利用核糖体RNA基因的真菌内部转录间隔区1(ITS1)区域的高通量测序技术,本研究共鉴定出431个真菌扩增子序列变体(ASV),这表明中国南海珊瑚中蕴藏着大量的真菌群落。我们的研究结果中值得注意的是,有10个真菌属首次在珊瑚中被报道,其中,、、、、、、属于子囊菌门,而、和属于担子菌门。此外,在不同珊瑚物种之间观察到真菌群落存在显著差异(<0.05)。特别是,柳珊瑚成为真菌多样性的真正避风港,拥有307个独特的ASV。相比之下,软珊瑚和的真菌多样性较低,分别有36个和21个独特的ASV,而石珊瑚的真菌群落相对稀少,总共只有10个独特的ASV。这些发现不仅为中国南海珊瑚的真菌多样性和功能提供了基础数据,也强调了全球珊瑚礁生态系统采取细致入微的保护和管理策略的必要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a68a/11278478/2767b5da8358/jof-10-00452-g001.jpg

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