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苯丙氨酰 - 转移核糖核酸·延伸因子Tu·鸟苷三磷酸与大肠杆菌聚尿苷酸编程核糖体结合时鸟苷三磷酸的水解速率。

The rate of cleavage of GTP on the binding of Phe-tRNA.elongation factor Tu.GTP to poly(U)-programmed ribosomes of Escherichia coli.

作者信息

Eccleston J F, Dix D B, Thompson R C

出版信息

J Biol Chem. 1985 Dec 25;260(30):16237-41.

PMID:3905812
Abstract

Interaction of Phe-tRNA.elongation factor Tu.GTP with poly(U)-programmed ribosomes containing an occupied P site can be described by a three-step kinetic mechanism. Initial binding is followed by the cleavage of GTP, and then a new peptide bond is formed. Rate constants controlling the first and third of these reactions are known, but only a lower limit for the rate constant of the cleavage step has been reported. We have determined this rate constant to be 20 s-1 at 5 degrees C, 30 s-1 at 15 degrees C, and 50 s-1 at 25 degrees C. This is much faster than the reverse step of the initial binding process and implies that the intrinsic accuracy of the ribosome in the initial selection step is sacrificed in favor of speed. The similarity of the kinetic and chemical mechanism of this GTP cleavage step with other nucleoside 5'-triphosphatases is discussed.

摘要

苯丙氨酰 - 转移核糖核酸(Phe - tRNA)、延伸因子Tu、鸟苷三磷酸(GTP)与含有被占据P位点的聚尿苷酸(poly(U))编程核糖体之间的相互作用可用三步动力学机制来描述。首先是初始结合,随后是GTP的裂解,然后形成一个新的肽键。控制这些反应第一步和第三步的速率常数是已知的,但关于裂解步骤速率常数仅报道了一个下限。我们已确定该速率常数在5℃时为20 s⁻¹,15℃时为30 s⁻¹,25℃时为50 s⁻¹。这比初始结合过程的逆向步骤快得多,这意味着核糖体在初始选择步骤中的内在准确性为了速度而被牺牲。本文还讨论了该GTP裂解步骤与其他核苷5'-三磷酸酶在动力学和化学机制上的相似性。

相似文献

1
The rate of cleavage of GTP on the binding of Phe-tRNA.elongation factor Tu.GTP to poly(U)-programmed ribosomes of Escherichia coli.苯丙氨酰 - 转移核糖核酸·延伸因子Tu·鸟苷三磷酸与大肠杆菌聚尿苷酸编程核糖体结合时鸟苷三磷酸的水解速率。
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引用本文的文献

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Late events of translation initiation in bacteria: a kinetic analysis.细菌中翻译起始的后期事件:动力学分析
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2
Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome.延伸因子Tu依赖的氨酰tRNA与大肠杆菌核糖体A位点结合的完整动力学机制。
EMBO J. 1998 Dec 15;17(24):7490-7. doi: 10.1093/emboj/17.24.7490.
3
Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation.
tRNA(苯丙氨酸)的许多保守核苷酸对于三元复合物形成和肽链延伸并非必需。
EMBO J. 1994 May 15;13(10):2464-71. doi: 10.1002/j.1460-2075.1994.tb06531.x.
4
Codon choice and gene expression: synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro.密码子选择与基因表达:同义密码子在体外指导氨酰化转运RNA与核糖体结合的能力上存在差异。
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4242-6. doi: 10.1073/pnas.85.12.4242.
5
Tests of the ribosome editor hypothesis. III. A mutant Escherichia coli with a defective ribosome editor.核糖体编辑假说的测试。III. 一种核糖体编辑缺陷的突变型大肠杆菌。
Mol Gen Genet. 1987 Sep;209(2):313-8. doi: 10.1007/BF00329659.
6
The ATPase kinetics of insect fibrillar flight muscle myosin subfragment-1.昆虫纤维状飞行肌肌球蛋白亚片段-1的ATP酶动力学
J Muscle Res Cell Motil. 1986 Apr;7(2):179-92. doi: 10.1007/BF01753419.