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在延伸因子Tu依赖的氨酰-tRNA与大肠杆菌核糖体结合过程中鸟苷三磷酸水解和肽形成的单周转动力学研究。

Single turnover kinetic studies of guanosine triphosphate hydrolysis and peptide formation in the elongation factor Tu-dependent binding of aminoacyl-tRNA to Escherichia coli ribosomes.

作者信息

Thompson R C, Dix D B, Eccleston J F

出版信息

J Biol Chem. 1980 Dec 10;255(23):11088-90.

PMID:7002916
Abstract

The rates of GTP hydrolysis and peptide formation during the reaction of Phe-tRNA . elongation factor Tu . GTP complex with acetyl-Phe-tRNA polyuridylate-programmed ribosomes have been measured. The GTPase reaction is second-order up to reactant concentrations of 0.2 microM and has a rate constant of 5 X 10(6) M-1 s-1 at 5 degrees C and 5 mM Mg2+, pH 7.2. The formation of peptide shows a lag phase and has a rate constant of 0.4 S-1 under these conditions. The results of a series of experiments between 5 degrees C and 25 degrees C show that GTP hydrolysis and peptide formation have Arrhenius activation energies of 13.1 and 15.3 kcal mol-1, respectively. The results indicate that these reactions proceed in vitro at rates comparable to those observed for protein biosynthesis in vivo, and that peptide bond formation occurs after GTP hydrolysis.

摘要

已测定了苯丙氨酰 - tRNA·延伸因子Tu·GTP复合物与乙酰苯丙氨酰 - tRNA聚尿苷酸编程核糖体反应过程中GTP水解和肽形成的速率。在反应物浓度达0.2微摩尔时,GTP酶反应为二级反应,在5℃、5毫摩尔镁离子、pH值7.2条件下,其速率常数为5×10⁶ M⁻¹ s⁻¹。肽的形成呈现一个延迟期,在此条件下其速率常数为0.4 S⁻¹。在5℃至25℃之间进行的一系列实验结果表明,GTP水解和肽形成的阿仑尼乌斯活化能分别为13.1千卡/摩尔和15.3千卡/摩尔。结果表明,这些反应在体外的进行速率与体内蛋白质生物合成所观察到的速率相当,并且肽键形成发生在GTP水解之后。

相似文献

1
Single turnover kinetic studies of guanosine triphosphate hydrolysis and peptide formation in the elongation factor Tu-dependent binding of aminoacyl-tRNA to Escherichia coli ribosomes.在延伸因子Tu依赖的氨酰-tRNA与大肠杆菌核糖体结合过程中鸟苷三磷酸水解和肽形成的单周转动力学研究。
J Biol Chem. 1980 Dec 10;255(23):11088-90.
2
Guanosine 5'-O-(3-thiotriphosphate) as an analog of GTP in protein biosynthesis. The effects of temperature and polycations on the accuracy of initial recognition of aminoacyl-tRNA ternary complexes by ribosomes.5'-O-(3-硫代三磷酸)鸟苷作为蛋白质生物合成中GTP的类似物。温度和多阳离子对核糖体对氨酰-tRNA三元复合物初始识别准确性的影响。
J Biol Chem. 1986 Mar 5;261(7):3238-43.
3
Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome.延伸因子Tu依赖的氨酰tRNA与大肠杆菌核糖体A位点结合的完整动力学机制。
EMBO J. 1998 Dec 15;17(24):7490-7. doi: 10.1093/emboj/17.24.7490.
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The reaction of ribosomes with elongation factor Tu.GTP complexes. Aminoacyl-tRNA-independent reactions in the elongation cycle determine the accuracy of protein synthesis.核糖体与延伸因子Tu.GTP复合物的反应。延伸循环中不依赖氨酰tRNA的反应决定了蛋白质合成的准确性。
J Biol Chem. 1986 Apr 15;261(11):4868-74.
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GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs.异聚体mRNA翻译过程中延伸因子Tu的GTP消耗
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The excess GTP hydrolyzed during mistranslation is expended at the stage of EF-Tu-promoted binding of non-cognate aminoacyl-tRNA.错义翻译过程中水解的过量鸟苷三磷酸(GTP)在延伸因子-Tu(EF-Tu)促进非同源氨酰基转移核糖核酸(tRNA)结合的阶段被消耗。
FEBS Lett. 1986 Feb 3;196(1):103-7. doi: 10.1016/0014-5793(86)80222-8.
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Quantitative study of the interaction of aminoacyl-tRNA with the a site of Escherichia coli ribosomes: equilibrium and kinetic parameters of binding in the absence of EF-Tu factor and GTP.氨酰-tRNA与大肠杆菌核糖体A位点相互作用的定量研究:在无EF-Tu因子和GTP情况下结合的平衡及动力学参数
FEBS Lett. 1981 Mar 9;125(1):10-4. doi: 10.1016/0014-5793(81)80985-4.
8
The rate of cleavage of GTP on the binding of Phe-tRNA.elongation factor Tu.GTP to poly(U)-programmed ribosomes of Escherichia coli.苯丙氨酰 - 转移核糖核酸·延伸因子Tu·鸟苷三磷酸与大肠杆菌聚尿苷酸编程核糖体结合时鸟苷三磷酸的水解速率。
J Biol Chem. 1985 Dec 25;260(30):16237-41.
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Accuracy of protein biosynthesis. A kinetic study of the reaction of poly(U)-programmed ribosomes with a leucyl-tRNA2-elongation factor Tu-GTP complex.蛋白质生物合成的准确性。聚(U)编程核糖体与亮氨酰 - tRNA2 - 延伸因子Tu - GTP复合物反应的动力学研究。
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Kirromycin, an inhibitor of protein biosynthesis that acts on elongation factor Tu.奇霉素,一种作用于延伸因子Tu的蛋白质生物合成抑制剂。
Proc Natl Acad Sci U S A. 1974 Dec;71(12):4910-4. doi: 10.1073/pnas.71.12.4910.

引用本文的文献

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The accuracy of codon recognition by polypeptide release factors.多肽释放因子对密码子识别的准确性。
Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2046-51. doi: 10.1073/pnas.030541097.
2
Programmed translational frameshifting.程序性翻译移码
Microbiol Rev. 1996 Mar;60(1):103-34. doi: 10.1128/mr.60.1.103-134.1996.
3
Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation.tRNA(苯丙氨酸)的许多保守核苷酸对于三元复合物形成和肽链延伸并非必需。
EMBO J. 1994 May 15;13(10):2464-71. doi: 10.1002/j.1460-2075.1994.tb06531.x.
4
The accuracy of protein biosynthesis is limited by its speed: high fidelity selection by ribosomes of aminoacyl-tRNA ternary complexes containing GTP[gamma S].蛋白质生物合成的准确性受其速度限制:核糖体对含有鸟苷三磷酸γ-硫代物(GTP[γS])的氨酰-tRNA三元复合物进行高保真选择。
Proc Natl Acad Sci U S A. 1982 Aug;79(16):4922-6. doi: 10.1073/pnas.79.16.4922.
5
Codon usage can affect efficiency of translation of genes in Escherichia coli.密码子使用可影响大肠杆菌中基因的翻译效率。
Nucleic Acids Res. 1984 Sep 11;12(17):6663-71. doi: 10.1093/nar/12.17.6663.
6
Elongation factor Tu.guanosine 3'-diphosphate 5'-diphosphate complex increases the fidelity of proofreading in protein biosynthesis: mechanism for reducing translational errors introduced by amino acid starvation.延伸因子Tu·鸟苷3'-二磷酸5'-二磷酸复合物提高了蛋白质生物合成中校对的保真度:减少氨基酸饥饿引起的翻译错误的机制。
Proc Natl Acad Sci U S A. 1986 Apr;83(7):2027-31. doi: 10.1073/pnas.83.7.2027.
7
Codon choice and gene expression: synonymous codons differ in their ability to direct aminoacylated-transfer RNA binding to ribosomes in vitro.密码子选择与基因表达:同义密码子在体外指导氨酰化转运RNA与核糖体结合的能力上存在差异。
Proc Natl Acad Sci U S A. 1988 Jun;85(12):4242-6. doi: 10.1073/pnas.85.12.4242.
8
Ribosomal frameshifting in the yeast retrotransposon Ty: tRNAs induce slippage on a 7 nucleotide minimal site.酵母逆转录转座子Ty中的核糖体移码:tRNA诱导在一个7核苷酸最小位点上的滑动。
Cell. 1990 Jul 27;62(2):339-52. doi: 10.1016/0092-8674(90)90371-k.
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Unusual codon bias occurring within insertion sequences in Escherichia coli.大肠杆菌插入序列中出现的异常密码子偏倚。
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