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CELLNET技术:单细胞分辨率下的空间组织功能性三维网络。

CELLNET technology: Spatially organized, functional 3D networks at single cell resolution.

作者信息

Poudel Arun, Kunwar Puskal, Aryal Ujjwal, Merife Anna-Blessing, Soman Pranav

出版信息

bioRxiv. 2024 Jul 16:2024.07.12.603216. doi: 10.1101/2024.07.12.603216.

Abstract

UNLABELLED

Cells possess the remarkable ability to generate tissue-specific 3D interconnected networks and respond to a wide range of stimuli. Understanding the link between the spatial arrangement of individual cells and their networks' emergent properties is necessary for the discovery of both fundamental biology as well as applied therapeutics. However, current methods spanning from lithography to 3D photo-patterning to acoustofluidic devices are unable to generate interconnected and organized single cell 3D networks within native extracellular matrix (ECM). To address this challenge, we report a novel technology coined as CELLNET. This involves the generation of crosslinked collagen within multi-chambered microfluidic devices followed by femtosecond laser ablation of 3D microchannel networks and cell seeding. Using model cells, we show that cell migrate within ablated networks within hours, self-organize and form viable, interconnected, 3D networks in custom architectures such as square grid, concentric circle, parallel lines, and spiral patterns. Heterotypic CELLNETs can also be generated by seeding multiple cell types in side-chambers of the devices. The functionality of cell networks can be studied by monitoring the real-time calcium signaling response of individual cells and signal propagation within CELLNETs when subjected to flow stimulus alone or a sequential combination of flow and biochemical stimuli. Furthermore, user-defined disrupted CELLNETs can be generated by lethally injuring target cells within the 3D network and analyzing the changes in their signaling dynamics. As compared to the current self-assembly based methods that exhibit high variability and poor reproducibility, CELLNETs can generate organized 3D single-cell networks and their real-time signaling responses to a range of stimuli can be accurately captured using simple cell seeding and easy-to-handle microfluidic devices. CELLNET, a new technology agnostic of cell types, ECM formulations, 3D cell-connectivity designs, or location and timing of network disruptions, could pave the way to address a range of fundamental and applied bioscience applications.

TEASER

New technology to generate 3D single cell interconnected and disrupted networks within natural extracellular matrix in custom configurations.

摘要

未标注

细胞具有生成组织特异性三维互连网络并对多种刺激做出反应的非凡能力。理解单个细胞的空间排列与其网络涌现特性之间的联系,对于发现基础生物学以及应用治疗方法都至关重要。然而,从光刻技术到三维光图案化技术再到声流体装置等当前方法,都无法在天然细胞外基质(ECM)中生成互连且有组织的单细胞三维网络。为应对这一挑战,我们报告了一种名为CELLNET的新技术。这涉及在多腔微流控装置中生成交联胶原蛋白,随后用飞秒激光烧蚀三维微通道网络并接种细胞。使用模型细胞,我们表明细胞在数小时内即可在烧蚀网络内迁移,自我组织并在诸如方格、同心圆、平行线和螺旋图案等定制结构中形成可行的、互连的三维网络。通过在装置的侧腔中接种多种细胞类型,还可以生成异型CELLNET。当单独受到流动刺激或流动与生化刺激的顺序组合时,通过监测单个细胞的实时钙信号响应以及CELLNET内的信号传播,可以研究细胞网络的功能。此外,通过对三维网络内的目标细胞进行致命损伤并分析其信号动力学变化,可以生成用户定义的受损CELLNET。与目前基于自组装的方法相比,后者具有高变异性和低重现性,CELLNET可以生成有组织的三维单细胞网络,并且使用简单的细胞接种和易于操作的微流控装置就可以准确捕获其对一系列刺激的实时信号响应。CELLNET是一种与细胞类型、ECM配方、三维细胞连接设计或网络破坏的位置和时间无关的新技术,可为解决一系列基础和应用生物科学应用铺平道路。

预告

在天然细胞外基质中以定制配置生成三维单细胞互连和受损网络的新技术。

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