• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

蛋白质与小分子相互作用对激酶构象的影响。

Impact of protein and small molecule interactions on kinase conformations.

作者信息

Kugler Valentina, Schwaighofer Selina, Feichtner Andreas, Enzler Florian, Fleischmann Jakob, Strich Sophie, Schwarz Sarah, Wilson Rebecca, Tschaikner Philipp, Troppmair Jakob, Sexl Veronika, Meier Pascal, Kaserer Teresa, Stefan Eduard

机构信息

Institute for Molecular Biology and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innsbruck, Austria.

Tyrolean Cancer Research Institute (TKFI), Innsbruck, Austria.

出版信息

Elife. 2024 Aug 1;13:RP94755. doi: 10.7554/eLife.94755.

DOI:10.7554/eLife.94755
PMID:39088265
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11293870/
Abstract

Protein kinases act as central molecular switches in the control of cellular functions. Alterations in the regulation and function of protein kinases may provoke diseases including cancer. In this study we investigate the conformational states of such disease-associated kinases using the high sensitivity of the kinase conformation (KinCon) reporter system. We first track BRAF kinase activity conformational changes upon melanoma drug binding. Second, we also use the KinCon reporter technology to examine the impact of regulatory protein interactions on LKB1 kinase tumor suppressor functions. Third, we explore the conformational dynamics of RIP kinases in response to TNF pathway activation and small molecule interactions. Finally, we show that CDK4/6 interactions with regulatory proteins alter conformations which remain unaffected in the presence of clinically applied inhibitors. Apart from its predictive value, the KinCon technology helps to identify cellular factors that impact drug efficacies. The understanding of the structural dynamics of full-length protein kinases when interacting with small molecule inhibitors or regulatory proteins is crucial for designing more effective therapeutic strategies.

摘要

蛋白激酶在细胞功能控制中充当核心分子开关。蛋白激酶调控和功能的改变可能引发包括癌症在内的疾病。在本研究中,我们利用激酶构象(KinCon)报告系统的高灵敏度来研究此类与疾病相关激酶的构象状态。我们首先追踪黑色素瘤药物结合后BRAF激酶活性的构象变化。其次,我们还使用KinCon报告技术来研究调节蛋白相互作用对LKB1激酶肿瘤抑制功能的影响。第三,我们探究RIP激酶响应TNF途径激活和小分子相互作用时的构象动力学。最后,我们表明CDK4/6与调节蛋白的相互作用会改变构象,而在临床应用抑制剂存在的情况下这些构象保持不变。除了其预测价值外,KinCon技术有助于识别影响药物疗效的细胞因子。了解全长蛋白激酶与小分子抑制剂或调节蛋白相互作用时的结构动力学对于设计更有效的治疗策略至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7c7a7b2a40fa/elife-94755-sa3-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/6b304ebab27f/elife-94755-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/2ec852259281/elife-94755-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/d81378e120c3/elife-94755-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7b595eb566e7/elife-94755-fig2-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/89441be70559/elife-94755-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/5a84d3238207/elife-94755-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/dc97ccfabcf4/elife-94755-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/4b743cc0cfb6/elife-94755-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/386833737f83/elife-94755-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7fa607348ae4/elife-94755-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/a91e05be0013/elife-94755-fig5-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7c7a7b2a40fa/elife-94755-sa3-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/6b304ebab27f/elife-94755-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/2ec852259281/elife-94755-fig1-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/d81378e120c3/elife-94755-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7b595eb566e7/elife-94755-fig2-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/89441be70559/elife-94755-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/5a84d3238207/elife-94755-fig3-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/dc97ccfabcf4/elife-94755-fig3-figsupp2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/4b743cc0cfb6/elife-94755-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/386833737f83/elife-94755-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7fa607348ae4/elife-94755-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/a91e05be0013/elife-94755-fig5-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c33/11293870/7c7a7b2a40fa/elife-94755-sa3-fig1.jpg

相似文献

1
Impact of protein and small molecule interactions on kinase conformations.蛋白质与小分子相互作用对激酶构象的影响。
Elife. 2024 Aug 1;13:RP94755. doi: 10.7554/eLife.94755.
2
Mutation-oriented profiling of autoinhibitory kinase conformations predicts RAF inhibitor efficacies.靶向突变的自抑制激酶构象分析预测 RAF 抑制剂的疗效。
Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31105-31113. doi: 10.1073/pnas.2012150117. Epub 2020 Nov 23.
3
KinCon: Cell-based recording of full-length kinase conformations.KinCon:基于细胞的全长激酶构象记录。
IUBMB Life. 2020 Jun;72(6):1168-1174. doi: 10.1002/iub.2241. Epub 2020 Feb 6.
4
Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules.有限蛋白水解结合稳定同位素标记揭示蛋白质(伪)激酶与小分子结合后的构象变化。
J Proteome Res. 2015 Oct 2;14(10):4179-93. doi: 10.1021/acs.jproteome.5b00282. Epub 2015 Aug 25.
5
Allosteric Kinase Inhibitors Reshape MEK1 Kinase Activity Conformations in Cells and In Silico.变构激酶抑制剂重塑细胞内和计算机模拟中的MEK1激酶活性构象。
Biomolecules. 2021 Mar 30;11(4):518. doi: 10.3390/biom11040518.
6
A Raf-induced allosteric transition of KSR stimulates phosphorylation of MEK.Raf 诱导的 KSR 变构跃迁刺激 MEK 的磷酸化。
Nature. 2011 Apr 21;472(7343):366-9. doi: 10.1038/nature09860. Epub 2011 Mar 27.
7
MEK drives BRAF activation through allosteric control of KSR proteins.MEK 通过变构控制 KSR 蛋白驱动 BRAF 的激活。
Nature. 2018 Feb 22;554(7693):549-553. doi: 10.1038/nature25478. Epub 2018 Feb 12.
8
COT drives resistance to RAF inhibition through MAP kinase pathway reactivation.COT 通过激活 MAP 激酶通路驱动 RAF 抑制耐药。
Nature. 2010 Dec 16;468(7326):968-72. doi: 10.1038/nature09627. Epub 2010 Nov 24.
9
Mutation that blocks ATP binding creates a pseudokinase stabilizing the scaffolding function of kinase suppressor of Ras, CRAF and BRAF.突变阻断了 ATP 的结合,从而产生了一个假激酶,稳定了 Ras、 CRAF 和 BRAF 激酶抑制剂的支架功能。
Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6067-72. doi: 10.1073/pnas.1102554108. Epub 2011 Mar 25.
10
Molecular dynamics simulations and modelling of the residue interaction networks in the BRAF kinase complexes with small molecule inhibitors: probing the allosteric effects of ligand-induced kinase dimerization and paradoxical activation.BRAF激酶复合物与小分子抑制剂的残基相互作用网络的分子动力学模拟与建模:探究配体诱导的激酶二聚化和反常激活的变构效应。
Mol Biosyst. 2016 Oct 20;12(10):3146-65. doi: 10.1039/c6mb00298f. Epub 2016 Aug 2.

本文引用的文献

1
Roles of RIPK1 as a stress sentinel coordinating cell survival and immunogenic cell death.RIPK1 在作为应激感受器协调细胞存活和免疫原性细胞死亡中的作用。
Nat Rev Mol Cell Biol. 2023 Nov;24(11):835-852. doi: 10.1038/s41580-023-00623-w. Epub 2023 Aug 11.
2
Tracking and blocking interdependencies of cellular BRAF-MEK oncokinase activities.追踪和阻断细胞BRAF-MEK癌激酶活性的相互依赖性。
PNAS Nexus. 2023 Jun 5;2(6):pgad185. doi: 10.1093/pnasnexus/pgad185. eCollection 2023 Jun.
3
The evolution of non-small cell lung cancer metastases in TRACERx.
TRACERx 中观察到的非小细胞肺癌转移演变。
Nature. 2023 Apr;616(7957):534-542. doi: 10.1038/s41586-023-05729-x. Epub 2023 Apr 12.
4
Study of spatiotemporal regulation of kinase signaling using genetically encodable molecular tools.使用遗传可编码分子工具研究激酶信号的时空调控。
Curr Opin Chem Biol. 2022 Dec;71:102224. doi: 10.1016/j.cbpa.2022.102224. Epub 2022 Oct 28.
5
The cAMP-signaling cancers: Clinically-divergent disorders with a common central pathway.cAMP 信号通路相关癌症:具有共同核心通路的临床差异显著的疾病。
Front Endocrinol (Lausanne). 2022 Oct 13;13:1024423. doi: 10.3389/fendo.2022.1024423. eCollection 2022.
6
LKB1: An emerging therapeutic target for cardiovascular diseases.LKB1:心血管疾病治疗的新兴靶点。
Life Sci. 2022 Oct 1;306:120844. doi: 10.1016/j.lfs.2022.120844. Epub 2022 Jul 27.
7
Structural features of the protein kinase domain and targeted binding by small-molecule inhibitors.蛋白质激酶结构域的结构特征和小分子抑制剂的靶向结合。
J Biol Chem. 2022 Aug;298(8):102247. doi: 10.1016/j.jbc.2022.102247. Epub 2022 Jul 10.
8
Tracking mutation and drug-driven alterations of oncokinase conformations.追踪癌激酶构象的突变及药物驱动的改变。
Memo. 2022 Jun;15(2):137-142. doi: 10.1007/s12254-021-00790-6. Epub 2022 Jan 21.
9
LKB1: Can We Target an Hidden Target? Focus on NSCLC.LKB1:我们能否靶向一个隐藏的靶点?聚焦于非小细胞肺癌。
Front Oncol. 2022 May 11;12:889826. doi: 10.3389/fonc.2022.889826. eCollection 2022.
10
The Impact of RIPK1 Kinase Inhibition on Atherogenesis: A Genetic and a Pharmacological Approach.RIPK1激酶抑制对动脉粥样硬化形成的影响:遗传和药理学方法
Biomedicines. 2022 Apr 28;10(5):1016. doi: 10.3390/biomedicines10051016.