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追踪癌激酶构象的突变及药物驱动的改变。

Tracking mutation and drug-driven alterations of oncokinase conformations.

作者信息

Feichtner Andreas, Kugler Valentina, Schwaighofer Selina, Nuener Thomas, Fleischmann Jakob, Stefan Eduard

机构信息

Institute of Biochemistry and Center for Molecular Biosciences, University of Innsbruck, Innrain 80/82, 6020 Innsbruck, Austria.

Institute of Biochemistry and Center for Molecular Biosciences, University of Innsbruck, Innrain 80/82, 6020 Innsbruck, Austria; Tyrolean Cancer Research Institute, Innrain 66, 6020 Innsbruck, Austria.

出版信息

Memo. 2022 Jun;15(2):137-142. doi: 10.1007/s12254-021-00790-6. Epub 2022 Jan 21.

DOI:10.1007/s12254-021-00790-6
PMID:35677701
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7612828/
Abstract

Numerous kinases act as central nodes of cellular signaling networks. As such, many of these enzymes function as molecular switches for coordinating spatiotemporal signal transmission. Typically, it is the compartmentalized phosphorylation of protein substrates which relays the transient input signal to determine decisive physiological cell responses. Genomic alterations affect kinase abundance and/or their activities which contribute to the malignant transformation, progression, and metastasis of human cancers. Thus, major drug discovery efforts have been made to identify lead molecules targeting clinically relevant oncokinases. The concept of personalized medicine aims to apply the therapeutic agent with the highest efficacy towards a patient-specific mutation. Here, we discuss the implementation of a cell-based reporter system which may foster the decision-making process to identify the most promising lead-molecules. We present a modular kinase conformation (KinCon) biosensor platform for live-cell analyses of kinase activity states. This biosensor facilitates the recording of kinase activity conformations of the wild-type and the respective mutated kinase upon lead molecule exposure. We reflect proof-of-principle studies demonstrating how this technology has been extended to profile drug properties of the full-length kinases BRAF and MEK1 in intact cells. Further, we pinpoint how this technology may open new avenues for systematic and patient-tailored drug discovery efforts. Overall, this precision-medicineoriented biosensor concept aims to determine kinase inhibitor specificity and anticipate their drug efficacies.

摘要

众多激酶充当细胞信号网络的核心节点。因此,这些酶中的许多作为分子开关来协调时空信号传递。通常,正是蛋白质底物的分区磷酸化传递瞬时输入信号以决定决定性的生理细胞反应。基因组改变影响激酶丰度和/或其活性,这有助于人类癌症的恶性转化、进展和转移。因此,人们已经做出了重大的药物研发努力来鉴定靶向临床相关致癌激酶的先导分子。个性化医疗的概念旨在针对患者特异性突变应用疗效最高的治疗药物。在此,我们讨论一种基于细胞的报告系统的实施,该系统可能有助于决策过程以识别最有前景的先导分子。我们提出了一种模块化激酶构象(KinCon)生物传感器平台,用于对激酶活性状态进行活细胞分析。这种生物传感器有助于记录野生型和各自突变型激酶在接触先导分子后的激酶活性构象。我们展示了原理验证研究,证明了该技术如何扩展到在完整细胞中分析全长激酶BRAF和MEK1的药物特性。此外,我们指出该技术如何为系统的和针对患者的药物研发努力开辟新途径。总体而言,这种面向精准医疗的生物传感器概念旨在确定激酶抑制剂的特异性并预测其药物疗效。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/ee9ff602da29/EMS144038-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/93286c998432/EMS144038-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/4a2b6f8e4b76/EMS144038-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/ee9ff602da29/EMS144038-f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/93286c998432/EMS144038-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/4a2b6f8e4b76/EMS144038-f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8531/7612828/ee9ff602da29/EMS144038-f003.jpg

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本文引用的文献

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Sci Signal. 2021 Apr 13;14(678):eabe4509. doi: 10.1126/scisignal.abe4509.
2
Allosteric Kinase Inhibitors Reshape MEK1 Kinase Activity Conformations in Cells and In Silico.变构激酶抑制剂重塑细胞内和计算机模拟中的MEK1激酶活性构象。
Biomolecules. 2021 Mar 30;11(4):518. doi: 10.3390/biom11040518.
3
Properties of FDA-approved small molecule protein kinase inhibitors: A 2021 update.
FDA 批准的小分子蛋白激酶抑制剂的特性:2021 年更新。
Pharmacol Res. 2021 Mar;165:105463. doi: 10.1016/j.phrs.2021.105463. Epub 2021 Jan 26.
4
Mutation-oriented profiling of autoinhibitory kinase conformations predicts RAF inhibitor efficacies.靶向突变的自抑制激酶构象分析预测 RAF 抑制剂的疗效。
Proc Natl Acad Sci U S A. 2020 Dec 8;117(49):31105-31113. doi: 10.1073/pnas.2012150117. Epub 2020 Nov 23.
5
KinCon: Cell-based recording of full-length kinase conformations.KinCon:基于细胞的全长激酶构象记录。
IUBMB Life. 2020 Jun;72(6):1168-1174. doi: 10.1002/iub.2241. Epub 2020 Feb 6.
6
Distinct Binding Preferences between Ras and Raf Family Members and the Impact on Oncogenic Ras Signaling.Ras 和 Raf 家族成员之间的独特结合偏好及其对致癌 Ras 信号转导的影响。
Mol Cell. 2019 Dec 19;76(6):872-884.e5. doi: 10.1016/j.molcel.2019.09.004. Epub 2019 Oct 9.
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BRAF inhibitors promote intermediate BRAF(V600E) conformations and binary interactions with activated RAS.BRAF 抑制剂促进中间态 BRAF(V600E)构象和与激活的 RAS 的二元相互作用。
Sci Adv. 2019 Aug 14;5(8):eaav8463. doi: 10.1126/sciadv.aav8463. eCollection 2019 Aug.
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Properties of FDA-approved small molecule protein kinase inhibitors.已批准用于临床的小分子蛋白激酶抑制剂的特性。
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Nat Rev Drug Discov. 2018 May;17(5):353-377. doi: 10.1038/nrd.2018.21. Epub 2018 Mar 16.
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