Parfenov D V, Saminskiĭ E M
Mol Biol (Mosk). 1985 Sep-Oct;19(5):1378-85.
In the presence of methanol 50S ribosomal subunits reveal two independents sites for binding of deacylated tRNA and/or AcPhe-tRNA. The site with lower affinity was identified with the donor (P') site as the dissociation constant (Ka) for AcPhe-tRNA was equal to the Michaelis constant for its reaction with puromycin both at 0 degrees C and 25 degrees C. Log Ka increases linearly with methanol concentration. This suggests that there are no conformational transitions of the interacting components, the affinity increases only quantatively due to lowering of the dielectric constant of water, and the site can exist even in the absence of methanol, but its Ka may be too low to be measured. It follows from these data that the higher-affinity site, which is observed both in the absence and presence of methanol, cannot be the P' site as it was generally believed. By all its properties it is more like the additional E site, which has been recently found on 70S ribosomes. Specifically, its affinity for deacylated tRNA is about 1000-fold higher than for AcPhe-tRNA (in the P'-site they are almost the same).
在有甲醇存在的情况下,50S核糖体亚基显示出两个独立的脱酰基tRNA和/或乙酰苯丙氨酸-tRNA结合位点。亲和力较低的位点被确定为供体(P')位点,因为在0℃和25℃时,乙酰苯丙氨酸-tRNA的解离常数(Ka)等于其与嘌呤霉素反应的米氏常数。log Ka随甲醇浓度呈线性增加。这表明相互作用的组分没有构象转变,亲和力仅因水的介电常数降低而定量增加,并且该位点即使在没有甲醇的情况下也可能存在,但其Ka可能太低而无法测量。从这些数据可以看出,无论有无甲醇都能观察到的高亲和力位点,并不像人们普遍认为的那样是P'位点。从其所有特性来看,它更像是最近在70S核糖体上发现的额外E位点。具体而言,它对脱酰基tRNA的亲和力比对乙酰苯丙氨酸-tRNA的亲和力高约1000倍(在P'位点它们几乎相同)。