Guangdong Eye Institute, Department of Ophthalmology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou 510080, China.
Medical Big Data Center, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences)Southern Medical University, 106, Zhongshan 2nd Road, Guangzhou, Guangdong Province 510080, China.
J Proteome Res. 2024 Sep 6;23(9):3754-3763. doi: 10.1021/acs.jproteome.4c00044. Epub 2024 Aug 2.
Retinal artery occlusion (RAO), which is positively correlated with acute ischemic stroke (IS) and results in severe visual impairment, lacks effective intervention drugs. This study aims to perform integrated analysis using UK Biobank plasma proteome data of RAO and IS to identify potential targets and preventive drugs. A total of 7191 participants (22 RAO patients, 1457 IS patients, 8 individuals with both RAO and IS, and 5704 healthy age-gender-matched controls) were included in this study. Unique 1461 protein expression profiles of RAO, IS, and the combined data set, extracted from UK Biobank Plasma proteomics projects, were analyzed using both differential expression analysis and elastic network regression (Enet) methods to identify shared key proteins. Subsequent analyses, including single cell type expression assessment, pathway enrichment, and druggability analysis, were conducted for verifying shared key proteins and discovery of new drugs. Five proteins were found to be shared among the samples, with all of them showing upregulation. Notably, adhesion G-protein coupled receptor G1 (ADGRG1) exhibited high expression in glial cells of the brain and eye tissues. Gene set enrichment analysis revealed pathways associated with lipid metabolism and vascular regulation and inflammation. Druggability analysis unveiled 15 drug candidates targeting ADGRG1, which demonstrated protective effects against RAO, especially troglitazone (-8.5 kcal/mol). Our study identified novel risk proteins and therapeutic drugs associated with the rare disease RAO, providing valuable insights into potential intervention strategies.
视网膜动脉阻塞(RAO)与急性缺血性中风(IS)呈正相关,可导致严重的视力损害,但其缺乏有效的干预药物。本研究旨在利用 UK Biobank 血浆蛋白质组学数据对 RAO 和 IS 进行综合分析,以鉴定潜在的靶点和预防药物。共纳入 7191 名参与者(22 例 RAO 患者、1457 例 IS 患者、8 例同时患有 RAO 和 IS 患者和 5704 例健康的年龄、性别匹配对照者)。从 UK Biobank Plasma proteomics 项目中提取 RAO、IS 和联合数据集的独特的 1461 种蛋白质表达谱,分别采用差异表达分析和弹性网络回归(Enet)方法进行分析,以鉴定共同的关键蛋白。随后进行单细胞类型表达评估、途径富集和药物可开发性分析等后续分析,以验证共同的关键蛋白并发现新的药物。在这些样本中发现有 5 种蛋白是共有的,且均呈上调表达。值得注意的是,粘附 G 蛋白偶联受体 G1(ADGRG1)在大脑和眼部组织的神经胶质细胞中高表达。基因集富集分析揭示了与脂质代谢、血管调节和炎症相关的途径。药物可开发性分析揭示了 15 种针对 ADGRG1 的候选药物,其中曲格列酮(-8.5 kcal/mol)对 RAO 具有保护作用。本研究鉴定了与罕见疾病 RAO 相关的新型风险蛋白和治疗药物,为潜在的干预策略提供了有价值的见解。