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在同型d构型的RNA和DNA上同型l-肽世界的逐步演化。

Gradual evolution of a homo-l-peptide world on homo-d-configured RNA and DNA.

作者信息

Węgrzyn Ewa, Mejdrová Ivana, Carell Thomas

机构信息

Department of Chemistry, Center for Nucleic Acids Therapies at the Institute for Chemical Epigenetics (ICE-M), Ludwig-Maximilians-Universität (LMU) München Butenandtstrasse 5-13 81377 Munich Germany

出版信息

Chem Sci. 2024 Aug 2;15(35):14171-6. doi: 10.1039/d4sc03384a.

DOI:10.1039/d4sc03384a
PMID:39129775
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11306956/
Abstract

Modern life requires the translation of genetic information - encoded by nucleic acids - into proteins, which establishes the essential link between genotype and phenotype. During translation, exclusively l-amino acids are loaded onto transfer RNA molecules (tRNA), which are then connected at the ribosome to give homo-l-proteins. In contrast to the homo-l-configuration of amino acids and proteins, the oligonucleotides involved are all d-configured (deoxy)ribosides. Previously, others and us have shown that if peptide synthesis occurs at homo d-configured oligonucleotides, a pronounced l-amino acid selectivity is observed, which reflects the d-sugar/l-amino acid world that evolved in nature. Here we further explore this astonishing selectivity. We show a peptide-synthesis/recapture-cycle that can lead to a gradual enrichment and hence selection of a homo-l-peptide world. We show that even if peptides with a mixed l/d-stereochemistry are formed, they are not competitive against the homo-l-counterparts. We also demonstrate that this selectivity is not limited to RNA but that peptide synthesis on DNA features the same l-amino acid preference. In total, the data bring us a step closer to an understanding of how homochirality on Earth once evolved.

摘要

现代生活需要将由核酸编码的遗传信息转化为蛋白质,这在基因型和表型之间建立了至关重要的联系。在翻译过程中,只有L-氨基酸被加载到转运RNA分子(tRNA)上,然后在核糖体处连接形成同型L-蛋白质。与氨基酸和蛋白质的同型L-构型相反,所涉及的寡核苷酸均为d-构型(脱氧)核糖核苷。此前,我们和其他人已经表明,如果肽合成发生在同型d-构型的寡核苷酸上,会观察到明显的L-氨基酸选择性,这反映了自然界中进化出的d-糖/L-氨基酸世界。在此,我们进一步探索这种惊人的选择性。我们展示了一个肽合成/回收循环,它可以导致逐渐富集,从而选择同型L-肽世界。我们表明,即使形成了具有混合L/d-立体化学的肽,它们也无法与同型L-对应物竞争。我们还证明,这种选择性不仅限于RNA,而且DNA上的肽合成也具有相同的L-氨基酸偏好。总的来说,这些数据使我们更接近于理解地球上的同手性是如何进化而来的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/871219725e48/d4sc03384a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/2d33dc8f8552/d4sc03384a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/b6aba6796fc6/d4sc03384a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/f8e530dcec97/d4sc03384a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/50d9b9f336df/d4sc03384a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/871219725e48/d4sc03384a-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/2d33dc8f8552/d4sc03384a-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/b6aba6796fc6/d4sc03384a-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/f8e530dcec97/d4sc03384a-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/50d9b9f336df/d4sc03384a-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3161/11389521/871219725e48/d4sc03384a-f5.jpg

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On the origin of the genetic code.关于遗传密码的起源。
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Loading of Amino Acids onto RNA in a Putative RNA-Peptide World.在假定的 RNA-肽世界中,氨基酸加载到 RNA 上。
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