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单细胞 RNA 测序揭示了卵巢癌的异质性,并构建了一个用于预后预测和免疫治疗的预后特征。

Single‑cell RNA sequencing reveals heterogeneity in ovarian cancer and constructs a prognostic signature for prognostic prediction and immunotherapy.

机构信息

Department of Gynaecology, Wenzhou Hospital of Integrated Traditional Chinese and Western Medicine, Wenzhou, China.

Department of Rheumatology and Immunology, The Fourth Affiliated Hospital, China Medical University, Shenyang 110000, China.

出版信息

Int Immunopharmacol. 2024 Oct 25;140:112855. doi: 10.1016/j.intimp.2024.112855. Epub 2024 Aug 10.

Abstract

BACKGROUND

Ovarian cancer (OC) is one of the cancers with a high incidence at present, which poses a severe threat to women's health. This study focused on identifying the heterogeneity among malignant epithelial cell OC and constructing an effective prognostic signature to predict prognosis and immunotherapy according to a multidisciplinary study.

METHODS

The InterCNV algorithm was used to identify the heterogeneity of OC based on the scRNA-seq and bulk RNA-seq data. Six algorithms selected EMTscore. An effective prognostic signature was conducted using the COX and Least Absolute Shrinkage and Selection Operator (LASSO) regression algorithms. The texting datasets were used to assess the accuracy of the prognostic signature. We evaluated different immune characteristics and immunotherapy response differences among other risk groups.

RESULTS

A prognostic signature including 14 genes was established. The patients in the high-risk group have poor survival outcomes. We also found that the patients in the low-risk group have higher immune cell infiltration, enrichment of immune checkpoints, and immunotherapy response, suggesting that the patients in the low-risk group may be more sensitive to immunotherapy. Finally, the laboratory test results showed that KREMEN2 was identified as a novel biomarker and therapeutic target for OC patients.

CONCLUSIONS

Our study established a GRG signature consisting of 16 genes based on the scRNA-seq and bulk RNA-seq data, which provides a new perspective on the prediction of prognosis and treatment strategy for OC.

摘要

背景

卵巢癌(OC)是目前发病率较高的癌症之一,严重威胁着女性健康。本研究通过多学科研究,重点关注恶性上皮细胞 OC 中的异质性,并构建有效的预后标志物,以预测预后和免疫治疗效果。

方法

使用 InterCNV 算法基于 scRNA-seq 和 bulk RNA-seq 数据识别 OC 的异质性。选择 EMTscore 中的六种算法。使用 COX 和 Least Absolute Shrinkage and Selection Operator(LASSO)回归算法构建有效的预后标志物。使用外部数据集评估预后标志物的准确性。评估不同风险组之间的不同免疫特征和免疫治疗反应差异。

结果

建立了一个包含 14 个基因的预后标志物。高风险组患者的生存结果较差。我们还发现低风险组患者的免疫细胞浸润水平较高,免疫检查点的富集度更高,对免疫治疗的反应更好,提示低风险组患者可能对免疫治疗更敏感。最后,实验室检测结果表明 KREMEN2 可作为 OC 患者的新型生物标志物和治疗靶点。

结论

本研究基于 scRNA-seq 和 bulk RNA-seq 数据建立了一个由 16 个基因组成的 GRG 标志物,为 OC 的预后预测和治疗策略提供了新的视角。

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