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1,3,4-恶二唑作为抗克氏锥虫和抗墨西哥利什曼原虫药物的设计、合成及体外和计算机模拟评价

Design, Synthesis, and In Vitro and In Silico Evaluation of 1,3,4-Oxadiazoles as Anti-Trypanosoma cruzi and Anti-Leishmania mexicana Agents.

作者信息

Delgado-Maldonado Timoteo, Moreno-Rodríguez Adriana, González-Morales Luis D, Flores-Villegas Any Laura, Rodríguez-González Jorge, Rodríguez-Páez Lorena, Aguirre-Alvarado Charmina, Sánchez-Palestino Luis M, Ortiz-Pérez Eyra, Rivera Gildardo

机构信息

Laboratorio de Biotecnología Farmacéutica, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, 88710, Reynosa, México.

Laboratorio de Estudios Epidemiológicos, Clínicos, Diseños Experimentales e Investigación, Facultad de Ciencias Químicas, Universidad Autónoma "Benito Juárez" de Oaxaca, Avenida Universidad S/N, Ex Hacienda Cinco Señores, 68120, Oaxaca, México.

出版信息

ChemMedChem. 2024 Dec 2;19(23):e202400241. doi: 10.1002/cmdc.202400241. Epub 2024 Oct 23.

Abstract

A series of novel 4-acetyl-1,3,4-oxadiazole derivatives was designed and synthesized for their biological evaluation in vitro against Trypanosoma cruzi (T. cruzi) and Leishmania mexicana (L. mexicana). Additionally, all compounds were evaluated by molecular docking on the cruzain of T. cruzi (TcCz) and the cysteine protease B (CPB) of L. mexicana (LmCPB) to know their potential mechanism of binding. Compound OX-12 had better trypanocidal activity against NINOA (IC=10.5 μM) and A1 (IC=21.7 μM) T. cruzi strains that reference drug benznidazole (IC=30.3 μM and 39.8 μM, respectively). Compound OX-2 had the best biological activity against L. mexicana in M379 (IC=11.9 μM) and FCQEPS (IC=34.0 μM) strains that the reference drug glucantime (IC>120 μM). All the compounds showed important interactions with residues on the active site of TcCz (Gly66, Trp26, Leu67, and Ala138) and LmCPB (Gly67, Asn62, Leu68, and Ala140). Finally, the molecular dynamics simulations of the compound OX-12 shown moderate stability from 40-115 ns with an RMSD value of 6.5 Å. Meanwhile, compound OX-2 showed a minor stability in complex with CPB from 25-200 ns of simulation (RMSD<9 Å). These results encourage to develop more potent and efficient trypanocidal and leishmanicidal agents using the 1,3,4-oxadiazole scaffold.

摘要

设计并合成了一系列新型4-乙酰基-1,3,4-恶二唑衍生物,用于体外抗克鲁斯锥虫(T. cruzi)和墨西哥利什曼原虫(L. mexicana)的生物学评价。此外,通过分子对接评估了所有化合物与克鲁斯锥虫的克氏锥虫蛋白酶(TcCz)和墨西哥利什曼原虫的半胱氨酸蛋白酶B(CPB,LmCPB)的结合情况,以了解其潜在的结合机制。化合物OX-12对NINOA(IC = 10.5 μM)和A1(IC = 21.7 μM)克鲁斯锥虫菌株的杀锥虫活性优于参比药物苯硝唑(分别为IC = 30.3 μM和39.8 μM)。化合物OX-2对M379(IC = 11.9 μM)和FCQEPS(IC = 34.0 μM)墨西哥利什曼原虫菌株的生物活性最佳,优于参比药物葡甲胺(IC>120 μM)。所有化合物均与TcCz(Gly66、Trp26、Leu67和Ala138)和LmCPB(Gly67、Asn62、Leu68和Ala140)活性位点上的残基表现出重要相互作用。最后,化合物OX-12的分子动力学模拟显示,在40-115 ns内具有中等稳定性,RMSD值为6.5 Å。同时,化合物OX-2与CPB复合物在25-200 ns模拟中显示出较小的稳定性(RMSD<9 Å)。这些结果鼓励使用1,3,4-恶二唑支架开发更有效和高效的杀锥虫和杀利什曼原虫药物。

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