Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, Sevilla 41012, Spain.
Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, Sevilla 41012, Spain.
Microbiol Res. 2024 Nov;288:127869. doi: 10.1016/j.micres.2024.127869. Epub 2024 Aug 10.
Hypersaline environments are extreme habitats with a limited prokaryotic diversity, mainly restricted to halophilic or halotolerant archaeal and bacterial taxa adapted to highly saline conditions. This study attempts to analyze the taxonomic and functional diversity of the prokaryotes that inhabit a solar saltern located at the Atlantic Coast, in Isla Cristina (Huelva, Southwest Spain), and the influence of salinity on the diversity and metabolic potential of these prokaryotic communities, as well as the interactions and cooperation among the individuals within that community. Brine samples were obtained from different saltern ponds, with a salinity range between 19.5 % and 39 % (w/v). Total prokaryotic DNA was sequenced using the Illumina shotgun metagenomic strategy and the raw sequence data were analyzed using supercomputing services following the MetaWRAP and SqueezeMeta protocols. The most abundant phyla at moderate salinities (19.5-22 % [w/v]) were Methanobacteriota (formerly "Euryarchaeota"), Pseudomonadota and Bacteroidota, followed by Balneolota and Actinomycetota and Uroviricota in smaller proportions, while at high salinities (36-39 % [w/v]) the most abundant phylum was Methanobacteriota, followed by Bacteroidota. The most abundant genera at intermediate salinities were Halorubrum and the bacterial genus Spiribacter, while the haloarchaeal genera Halorubrum, Halonotius, and Haloquadratum were the main representatives at high salinities. A total of 65 MAGs were reconstructed from the metagenomic datasets and different functions and pathways were identified in them, allowing to find key taxa in the prokaryotic community able to synthesize and supply essential compounds, such as biotin, and precursors of other bioactive molecules, like β-carotene, and bacterioruberin, to other dwellers in this habitat, lacking the required enzymatic machinery to produce them. This work shed light on the ecology of aquatic hypersaline environments, such as the Atlantic Coast salterns, and on the dynamics and factors affecting the microbial populations under such extreme conditions.
高盐环境是具有有限原核生物多样性的极端栖息地,主要限于适应高盐条件的嗜盐或耐盐古菌和细菌分类群。本研究试图分析栖息在位于西班牙西南部乌韦尔瓦的大西洋海岸的克里斯蒂娜岛(Isla Cristina)的太阳能盐场中的原核生物的分类和功能多样性,以及盐度对这些原核生物群落多样性和代谢潜力的影响,以及该群落中个体之间的相互作用和合作。从不同盐田池塘中获得盐水样本,盐度范围在 19.5%至 39%(w/v)之间。使用 Illumina 鸟枪法宏基因组策略对总原核 DNA 进行测序,使用超级计算服务根据 MetaWRAP 和 SqueezeMeta 协议对原始序列数据进行分析。在中等盐度(19.5-22%[w/v])下最丰富的门是甲烷杆菌门(以前称为“古菌”)、假单胞菌门和拟杆菌门,其次是巴尔内洛托门和放线菌门和 Uroviricota 门,比例较小,而在高盐度(36-39%[w/v])下最丰富的门是甲烷杆菌门,其次是拟杆菌门。在中等盐度下最丰富的属是盐杆菌属和细菌属螺旋菌属,而在高盐度下主要代表的是古菌属盐杆菌属、盐氮菌属和盐四角菌属。从宏基因组数据集重建了总共 65 个 MAG,并在其中鉴定了不同的功能和途径,从而发现了能够合成和供应必需化合物(如生物素)以及其他生物活性分子(如β-胡萝卜素和菌红质)前体的原核生物群落中的关键分类群,为其他居住者提供这些栖息地中缺乏产生它们所需的酶机制的居住者。这项工作揭示了水生高盐环境(如大西洋海岸盐场)的生态学,以及在如此极端条件下影响微生物种群的动态和因素。