Identification and verification of four candidate biomarkers for early diagnosis of osteoarthritis by machine learning.

BACKGROUND

Osteoarthritis (OA) is a common chronic joint disease. This study aimed to investigate possible OA diagnostic biomarkers and to verify their significance in clinical samples.

METHODS

We exploited three datasets from the Gene Expression Omnibus (GEO) database, serving as the training set. We first determined differentially expressed genes and screened candidate diagnostic biomarkers by applying three machine learning algorithms (Random Forest, Least Absolute Shrinkage and Selection Operator logistic regression, Support Vector Machine-Recursive Feature Elimination). Another GEO dataset was used as the validation set. The test set consisted of RNA-sequenced peripheral blood samples collected from patients and healthy donors. Blood samples and chondrocytes were collected for quantitative real-time PCR to confirm expression levels. Receiver operating characteristic curves were generated for individual and combined biomarkers.

RESULTS

In total, 251 DEGs were screened, where , and were screened by all three algorithms. The area under the curve (AUC) of various biomarkers in our test set did not reach as high as that in public datasets. exhibited highest AUC of 0.947 in the training set but 0.691 in our test set, while the favorable combined model comprising , , and demonstrated an AUC of 0.986 in the training set, 1.000 in the validation set and 0.836 in our test set.

CONCLUSION

We identified a combined model for early diagnosis of OA that includes , , and . This finding offers new avenues for further exploration of mechanisms underlying OA.