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核心技术专利:CN118964589B侵权必究
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在 中开发一种无诱导剂、毒力基因启动子控制、荧光报告基因标记的 CRISPR 干扰系统。

Development of an inducer-free, virulence gene promoter-controlled, and fluorescent reporter-labeled CRISPR interference system in .

机构信息

Department of Medical Biology and Center for New Antibacterial Strategies (CANS), UT- The Arctic University of Norway, Tromsø, Norway.

Faculty of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, Ås, Norway.

出版信息

Microbiol Spectr. 2024 Oct 3;12(10):e0060224. doi: 10.1128/spectrum.00602-24. Epub 2024 Aug 20.


DOI:10.1128/spectrum.00602-24
PMID:39162514
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11448056/
Abstract

The dCas9-based Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) interference (CRISPRi) gene regulation technique requires two components: a catalytically inactive Cas9 protein (dCas9) and a single-guide RNA that targets the gene of interest. This system is commonly activated by expressing dCas9 through an inducible gene promoter, but these inducers may affect cellular physiology, and accessibility and permeability of the inducer are limited in relevant model systems. Here, we have developed an alternative approach for CRISPRi activation in the clinical isolate USA300 LAC, where dCas9 was expressed through endogenous virulence gene promoters (vgp); coagulase, autolysin, or fibronectin-binding protein A. Additionally, we integrated a fluorescent reporter gene into the vgp-CRISPRi system to monitor the activity of the -controlling promoter. Testing the efficacy of vgp-CRISPRi by inducing growth arrest (when targeting penicillin-binding protein 1), downregulating target gene expression, or blocking coagulase-dependent coagulation of blood plasma, we provide a proof-of-concept demonstration that the virulence gene promoter-driven CRISPRi system is functional in .IMPORTANCEThe presented inducer-free, endogenous virulence gene promoter-induced, dCas9-based Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) interference (CRISPRi system addresses several shortcomings related to the use of inducer-dependent systems such as effects on cell physiology or limitations in permeability, and it avoids the high, putatively toxic levels of dCas9 in CRISPRi systems controlled by strong, constitutive promoters.

摘要

基于 dCas9 的成簇规律间隔短回文重复 (CRISPR) 干扰 (CRISPRi) 基因调控技术需要两个组件:一种无催化活性的 Cas9 蛋白 (dCas9) 和一种靶向感兴趣基因的单指导 RNA。该系统通常通过表达 dCas9 来激活诱导型基因启动子,但这些诱导剂可能会影响细胞生理学,并且诱导剂的可及性和通透性在相关模型系统中受到限制。在这里,我们开发了一种替代方法,用于在临床分离株 USA300 LAC 中激活 CRISPRi,其中 dCas9 通过内源性毒力基因启动子 (vgp) 表达; 凝固酶、自溶酶或纤维结合蛋白 A。此外,我们将荧光报告基因整合到 vgp-CRISPRi 系统中,以监测 - 控制启动子的活性。通过诱导生长停滞 (靶向青霉素结合蛋白 1 时)、下调靶基因表达或阻断凝固酶依赖性血浆凝固来测试 vgp-CRISPRi 的功效,我们提供了一个概念验证,证明了毒力基因启动子驱动的 CRISPRi 系统在 USA300 LAC 中是功能性的。

重要性

所提出的无诱导剂、内源性毒力基因启动子诱导、基于 dCas9 的成簇规律间隔短回文重复 (CRISPR) 干扰 (CRISPRi) 系统解决了与使用诱导剂依赖性系统相关的几个缺点,例如对细胞生理学的影响或通透性的限制,并且它避免了由强组成性启动子控制的 CRISPRi 系统中 dCas9 的高、潜在毒性水平。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/48b8f542bac6/spectrum.00602-24.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/00674fedc64a/spectrum.00602-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/32d235055121/spectrum.00602-24.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/134f1ca83c82/spectrum.00602-24.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/73990aa752ab/spectrum.00602-24.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/48b8f542bac6/spectrum.00602-24.f005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/00674fedc64a/spectrum.00602-24.f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/32d235055121/spectrum.00602-24.f002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/134f1ca83c82/spectrum.00602-24.f003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/73990aa752ab/spectrum.00602-24.f004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8976/11448056/48b8f542bac6/spectrum.00602-24.f005.jpg

相似文献

[1]
Development of an inducer-free, virulence gene promoter-controlled, and fluorescent reporter-labeled CRISPR interference system in .

Microbiol Spectr. 2024-10-3

[2]
Feasibility of a Conditional Knockout System for Based on CRISPR Interference.

Front Cell Infect Microbiol. 2018-2-27

[3]
Transcriptional Knockdown in Pneumococci Using CRISPR Interference.

Methods Mol Biol. 2019

[4]
A multiplex CRISPR interference tool for virulence gene interrogation in Legionella pneumophila.

Commun Biol. 2021-2-4

[5]
Construction of a Gene Knockdown System Based on Catalytically Inactive ("Dead") Cas9 (dCas9) in Staphylococcus aureus.

Appl Environ Microbiol. 2017-5-31

[6]
Tailor-made gene silencing of Staphylococcus aureus clinical isolates by CRISPR interference.

PLoS One. 2018-1-29

[7]
A Broad-Host-Range CRISPRi Toolkit for Silencing Gene Expression in .

ACS Synth Biol. 2019-10-18

[8]
A CRISPR Interference Platform for Efficient Genetic Repression in .

mSphere. 2019-2-13

[9]
CRISPR interference and its applications.

Prog Mol Biol Transl Sci. 2021

[10]
Reversible Gene Expression Control in Yersinia pestis by Using an Optimized CRISPR Interference System.

Appl Environ Microbiol. 2019-5-30

本文引用的文献

[1]
Genome-wide CRISPRi screens for high-throughput fitness quantification and identification of determinants for dalbavancin susceptibility in .

mSystems. 2024-7-23

[2]
A CRISPRi-based genetic resource to study essential genes.

mBio. 2024-1-16

[3]
Synthetic genetic oscillators demonstrate the functional importance of phenotypic variation in pneumococcal-host interactions.

Nat Commun. 2023-11-17

[4]
Staphylococcal Aggregate Morphology and Protection from Antibiotics Are Dependent on Distinct Mechanisms Arising from Postsurgical Joint Components and Fluid Motion.

J Bacteriol. 2023-4-25

[5]
Cas9 off-target binding to the promoter of bacterial genes leads to silencing and toxicity.

Nucleic Acids Res. 2023-4-24

[6]
CRISPRi-seq for genome-wide fitness quantification in bacteria.

Nat Protoc. 2022-2

[7]
Exploration of Bacterial Bottlenecks and Streptococcus pneumoniae Pathogenesis by CRISPRi-Seq.

Cell Host Microbe. 2021-1-13

[8]
Multistable and dynamic CRISPRi-based synthetic circuits.

Nat Commun. 2020-6-2

[9]
Stochastic Expression of Sae-Dependent Virulence Genes during Staphylococcus aureus Biofilm Development Is Dependent on SaeS.

mBio. 2020-1-14

[10]
CRISPR Interference for Rapid Knockdown of Essential Cell Cycle Genes in .

mSphere. 2019-3-20

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