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一种含噻吡啶的手性镜像铜中心的人工非血红素金属酶。

A thiopyridine-bound mirror-image copper center in an artificial non-heme metalloenzyme.

机构信息

Graduate School of Agriculture, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai-shi, Osaka 599-8531, Japan.

Graduate School of Agriculture, Osaka Metropolitan University, 1-1 Gakuen-cho, Naka-ku, Sakai-shi, Osaka 599-8531, Japan.

出版信息

J Inorg Biochem. 2024 Nov;260:112694. doi: 10.1016/j.jinorgbio.2024.112694. Epub 2024 Aug 13.

Abstract

Artificial metalloenzymes, in which a metal complex and protein matrix are combined, have been synthesized to catalyze stereoselective reactions using the chiral environment provided by the protein cavity. Artificial metalloenzymes can be engineered by the chemical modification and mutagenesis of the protein matrix. We developed artificial non-heme metalloenzymes using a cupin superfamily protein (TM1459) with a 4-His tetrad-metal-binding motif. The Cu-bound H52A/C106D mutant with 3-His triad showed a S-enantioselective Michael addition of nitromethane to α,β-unsaturated ketone, 2-aza-chalcone 1. In this study, we demonstrated a chemical modification near the copper-binding site of this mutant to reverse its enantioselectivity. For chemical modification, the amino acid on the Si-face of the binding state of 1 to the copper center was replaced with Cys, followed by reaction with 4,4'-dithiopyridine (4-PDS) to form S-(pyridin-4-ylthio)cysteine (Cys-4py). Cu-bound I49C-4py/H52A/C106D showed reversal of the enantioselectivity from S-form to R-form (ee = 71%, (R)). The effect of steric hindrance of the amino acids at position 49 on enantioselectivity was investigated using I49X/H52A/C106D mutants (X = A, C, I, F, and W). Additionally, chemical modification with 2,2'-dithiopyridine (2-PDS) produced I49-2py/H52A/C106D, which showed lower R-enantioselectivity than I49-4py/H52A/C106D. Among the mutants, the 4py-modification on the Si-face was the most effective in reversing the enantioselectivity. By tuning the Re-face side, the H54A mutation introduced into the I49C-4py/H52A/C106D increased the R-enantioselectivity (ee = 88%, (R)). X-ray crystallography revealed a coordinated structure with ligation of thiopyridine in Cu-bound I49C-4py/H52A/H54A/C106D.

摘要

人工金属酶是将金属配合物与蛋白质基质结合而合成的,它利用蛋白质腔提供的手性环境来催化立体选择性反应。可以通过化学修饰和蛋白质基质的突变来设计人工金属酶。我们使用具有 4-His 四联体金属结合基序的 cupin 超家族蛋白(TM1459)开发了人工非血红素金属酶。具有 3-His 三联体的 Cu 结合 H52A/C106D 突变体对α,β-不饱和酮、2-氮杂查尔酮 1 的硝甲烷 S-对映选择性迈克尔加成显示出反应性。在这项研究中,我们证明了可以通过对该突变体的铜结合位点进行化学修饰来逆转其对映选择性。对于化学修饰,将与铜中心结合的 1 的结合状态的 Si-面上的氨基酸替换为半胱氨酸,然后用 4,4'-二硫代吡啶(4-PDS)反应形成 S-(吡啶-4-基硫代)半胱氨酸(Cys-4py)。Cu 结合的 I49C-4py/H52A/C106D 显示出从 S 型到 R 型(ee = 71%,(R))的对映选择性逆转。使用 I49X/H52A/C106D 突变体(X = A、C、I、F 和 W)研究了 49 位氨基酸的空间位阻对映选择性的影响。此外,用 2,2'-二硫代吡啶(2-PDS)进行化学修饰产生了 I49-2py/H52A/C106D,其 R 对映选择性低于 I49-4py/H52A/C106D。在突变体中,Si-面上的 4py 修饰最有效地逆转对映选择性。通过调整 Re-面,引入 I49C-4py/H52A/C106D 的 H54A 突变增加了 R 对映选择性(ee = 88%,(R))。X 射线晶体学揭示了 Cu 结合的 I49C-4py/H52A/H54A/C106D 中与硫吡啶配位的结构。

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