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不同的作用因子驱动着极地海洋沿海沉积物中生物聚合物不同的加工机制。

Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments.

机构信息

Max Planck Institute for Marine Microbiology, Bremen, Germany.

Department of Earth, Marine and Environmental Sciences, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.

出版信息

Environ Microbiol. 2024 Jul;26(8):e16687. doi: 10.1111/1462-2920.16687.

Abstract

Heterotrophic bacteria in the ocean initiate biopolymer degradation using extracellular enzymes that yield low molecular weight hydrolysis products in the environment, or by using a selfish uptake mechanism that retains the hydrolysate for the enzyme-producing cell. The mechanism used affects the availability of hydrolysis products to other bacteria, and thus also potentially the composition and activity of the community. In marine systems, these two mechanisms of substrate processing have been studied in the water column, but to date, have not been investigated in sediments. In surface sediments from an Arctic fjord of Svalbard, we investigated mechanisms of biopolymer hydrolysis using four polysaccharides and mucin, a glycoprotein. Extracellular hydrolysis of all biopolymers was rapid. Moreover, rapid degradation of mucin suggests that it may be a key substrate for benthic microbes. Although selfish uptake is common in ocean waters, only a small fraction (0.5%-2%) of microbes adhering to sediments used this mechanism. Selfish uptake was carried out primarily by Planctomycetota and Verrucomicrobiota. The overall dominance of extracellular hydrolysis in sediments, however, suggests that the bulk of biopolymer processing is carried out by a benthic community relying on the sharing of enzymatic capabilities and scavenging of public goods.

摘要

海洋中的异养细菌使用细胞外酶启动生物聚合物降解,这些酶在环境中产生低分子量的水解产物,或者通过使用自私的摄取机制将水解产物保留在产生酶的细胞中。所使用的机制会影响水解产物对其他细菌的可用性,从而也可能影响群落的组成和活性。在海洋系统中,这两种底物处理机制已经在水柱中进行了研究,但迄今为止,在沉积物中尚未进行研究。在斯瓦尔巴群岛的一个北极峡湾的表层沉积物中,我们使用四种多糖和粘蛋白(一种糖蛋白)研究了生物聚合物水解的机制。所有生物聚合物的细胞外水解都很快。此外,粘蛋白的快速降解表明它可能是底栖微生物的关键底物。尽管自私摄取在海洋中很常见,但只有一小部分(0.5%-2%)附着在沉积物上的微生物使用这种机制。自私摄取主要由 Planctomycetota 和 Verrucomicrobiota 进行。然而,由于沉积物中细胞外水解的总体优势,表明大部分生物聚合物的处理是由依靠共享酶能力和掠夺公共资源的底栖群落进行的。

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