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关于闭环圆形DNA的环形凝聚态

On the toroidal condensed state of closed circular DNA.

作者信息

Zhestkov A V

机构信息

Institute of Chemical Physics, USSR Academy of Sciences, Moscow.

出版信息

J Biomol Struct Dyn. 1985 Dec;3(3):515-20. doi: 10.1080/07391102.1985.10508438.

Abstract

The influence of double helix torsional elasticity on the compaction and structure of circular DNA compact form is studied theoretically in the case when the compact (globular) form has torus shape. For closed circular DNA the topological invariant, the linking number, yields a strict connection between conformation of the double helix considered as unifilar homopolymer and elastic energy of torsional twisting. The contribution of torsional elasticity to the free energy of the toruslike globule is calculated. This contribution is shown to be proportional to the square of superhelical density. Allowance of the torsional elasticity decreases the equilibrium radius of the toruslike globule formed by circular DNA. Closure of linear DNA into a ring widens the stability range of the relatively short DNA compact form and tightens it for long DNA.

摘要

在紧密(球状)形式为环形的情况下,从理论上研究了双螺旋扭转弹性对环状DNA紧密形式的压缩和结构的影响。对于闭环DNA,拓扑不变量——连环数,在将双螺旋视为单链均聚物的构象与扭转扭曲的弹性能之间建立了严格的联系。计算了扭转弹性对环状小球自由能的贡献。结果表明,这一贡献与超螺旋密度的平方成正比。考虑扭转弹性会减小由环状DNA形成的环状小球的平衡半径。将线性DNA环化会拓宽相对较短DNA紧密形式的稳定性范围,并使长DNA的紧密形式更加紧密。

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