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主动学习管道,用于识别 CDSS 本体候选术语。

Active Learning Pipeline to Identify Candidate Terms for a CDSS Ontology.

机构信息

Department of Public Health Sciences, College of Behavioral, Social, and Health Sciences, Clemson University, Clemson, SC, USA.

School of Computing, College of Engineering, Computing and Applied Science, Clemson University, Clemson, SC, USA.

出版信息

Stud Health Technol Inform. 2024 Aug 22;316:1338-1342. doi: 10.3233/SHTI240660.

DOI:10.3233/SHTI240660
PMID:39176629
Abstract

Ontology is essential for achieving health information and information technology application interoperability in the biomedical fields and beyond. Traditionally, ontology construction is carried out manually by human domain experts (HDE). Here, we explore an active learning approach to automatically identify candidate terms from publications, with manual verification later as a part of a deep learning model training and learning process. We introduce the overall architecture of the active learning pipeline and present some preliminary results. This work is a critical and complementary component in addition to manually building the ontology, especially during the long-term maintenance stage.

摘要

本体论对于实现生物医学领域及其他领域的健康信息和信息技术应用互操作性至关重要。传统上,本体论的构建是由人类领域专家(HDE)手动完成的。在这里,我们探索了一种主动学习方法,从出版物中自动识别候选术语,然后手动验证作为深度学习模型训练和学习过程的一部分。我们介绍了主动学习管道的总体架构,并给出了一些初步结果。这项工作是除了手动构建本体论之外的一个关键且互补的组成部分,特别是在长期维护阶段。

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Automatic Structuring of Ontology Terms Based on Lexical Granularity and Machine Learning: Algorithm Development and Validation.基于词汇粒度和机器学习的本体术语自动构建:算法开发与验证
JMIR Med Inform. 2020 Nov 25;8(11):e22333. doi: 10.2196/22333.
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Combining lexical and context features for automatic ontology extension.基于词汇和上下文特征的本体自动扩展。
J Biomed Semantics. 2020 Jan 13;11(1):1. doi: 10.1186/s13326-019-0218-0.
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Availability and usage of clinical decision support systems (CDSSs) in office-based primary care settings in the USA.美国基层医疗门诊环境中临床决策支持系统(CDSSs)的可用性和使用情况。
BMJ Health Care Inform. 2019 Dec;26(1). doi: 10.1136/bmjhci-2019-100015.
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ROBOT: A Tool for Automating Ontology Workflows.机器人:自动化本体工作流程的工具。
BMC Bioinformatics. 2019 Jul 29;20(1):407. doi: 10.1186/s12859-019-3002-3.
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J Am Med Inform Assoc. 2019 Nov 1;26(11):1314-1322. doi: 10.1093/jamia/ocz102.
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Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.Ontorat:基于本体设计模式自动生成新的本体术语、注释和公理。
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