Iannetti Lorenzo, Cambiaso Sonia, Rasera Fabio, Giacomello Alberto, Rossi Giulia, Bochicchio Davide, Tinti Antonio
Dipartimento di Ingegneria Meccanica ed Aerospaziale, Sapienza Università di Roma, Via Eudossiana 18, 00184 Roma, Italy.
Dipartimento di Fisica, Università of Genova, Via Dodecaneso 33, 16146 Genova, Italy.
J Chem Phys. 2024 Aug 28;161(8). doi: 10.1063/5.0221199.
The Martini model, a coarse-grained forcefield for biomolecular simulations, has experienced a vast increase in popularity in the past decade. Its building-block approach balances computational efficiency with high chemical specificity, enabling the simulation of organic and inorganic molecules. The modeling of coarse-grained beads as Lennard-Jones particles poses challenges for the accurate reproduction of liquid-vapor interfacial properties, which are crucial in various applications, especially in the case of water. The latest version of the forcefield introduces refined interaction parameters for water beads, tackling the well-known artifact of Martini water freezing at room temperature. In addition, multiple sizes of water beads are available for simulating the solvation of small cavities, including the smallest pockets of proteins. This work focuses on studying the interfacial properties of Martini water, including surface tension and surface thickness. Employing the test-area method, we systematically compute the liquid-vapor surface tension across various combinations of water bead sizes and for temperatures from 300 to 350 K. These findings are of interest to the Martini community as they allow users to account for the low interfacial tension of Martini water by properly adjusting observables computed via coarse-grained simulations to allow for accurate matching against all-atom or experimental results. Surface tension data are also interpreted in terms of local enrichment of the various mixture components at the liquid-vapor interface by means of Gibbs' adsorption formalism. Finally, the critical scaling of the Martini surface tension with temperature is reported to be consistent with the critical exponent of the 3D Ising universality class.
马尔蒂尼模型是一种用于生物分子模拟的粗粒度力场,在过去十年中其受欢迎程度大幅提高。它的构建模块方法在计算效率和高化学特异性之间取得了平衡,能够模拟有机和无机分子。将粗粒度珠子建模为 Lennard-Jones 粒子对准确再现液-气界面性质提出了挑战,而这些性质在各种应用中至关重要,尤其是在水的情况下。力场的最新版本引入了用于水珠子的精细相互作用参数,解决了马尔蒂尼水在室温下冻结这一众所周知的问题。此外,有多种尺寸的水珠子可用于模拟小空腔的溶剂化,包括蛋白质的最小口袋。这项工作专注于研究马尔蒂尼水的界面性质,包括表面张力和表面厚度。采用测试区域方法,我们系统地计算了不同水珠子尺寸组合以及 300 至 350 K 温度下的液-气表面张力。这些发现对马尔蒂尼社区很有意义,因为它们允许用户通过适当调整通过粗粒度模拟计算的可观测量来考虑马尔蒂尼水的低界面张力,以便与全原子或实验结果进行准确匹配。表面张力数据还通过吉布斯吸附形式主义从液-气界面处各种混合组分的局部富集角度进行了解释。最后,据报道马尔蒂尼表面张力随温度的临界标度与三维伊辛普适类的临界指数一致。